Scaffold JCVI_READ_941340

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JCVI_READ_941340

Scaffold JCVI_READ_941340

Overview

Basic Information
Taxon OID	2166559017 Open in IMG/M
Scaffold ID	JCVI_READ_941340 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	990
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034760	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ocean5-_00133020	F034760	N/A	RKQKALMDVITNLKTRDTFTPSQSGKKRQLYLDKIRKKDITKILDKDKRLLEWWKNI

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