Scaffold cont_contig11376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold cont_contig11376

Scaffold cont_contig11376

Overview

Basic Information
Taxon OID	2166559005 Open in IMG/M
Scaffold ID	cont_contig11376 Open in IMG/M
Source Dataset Name	Simulated microbial communities from Lyon, France
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1530
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated → Simulated Microbial Communities From Lyon, France

Source Dataset Sampling Location
Location Name	Lyon, France
Coordinates	Lat. (^o)	45.7580538	Long. (^o)	4.7649095	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022294	Metagenome / Metatranscriptome	215	Y
F097710	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
cont_0376.00001230	F097710	GAGG	MKSAIFAVVLLTLGLLSLPVLAQQQDLQDVMNAANALSARESELLGKKERGGR
cont_0376.00001250	F022294	AGCAG	MPEFRFDPPLTLKGNIVVRNLDDAVRFMIGYREARRPELQTSVLYRLEGAAGETEERHAGYAFRGWAEAEGLILKLDE

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