Scaffold cont_contig00566

Overview

Basic Information

• Taxon OID: 2166559005
• Scaffold ID: cont_contig00566
• Source Dataset Name: Simulated microbial communities from Lyon, France
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3819
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated → Simulated Microbial Communities From Lyon, France

Source Dataset Sampling Location

• Location Name: Lyon, France
• Coordinates
  • Lat. (^o): 45.7580538
  • Long. (^o): 4.7649095

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008875	Metagenome / Metatranscriptome	326	Y
F035379	Metagenome / Metatranscriptome	172	Y
F066618	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
cont_0566.00000020	F035379	AGG	MKNRKNYIARSTATLTQSGLLAALLQHQRRRMIELSQRRAQREQAHGLLRNSLTWLLARYHNITAGRRFRGGFGDETVPRHT
cont_0566.00000060	F008875	GAGG	MHNEGENSITGPKETERLTGELEIDYQRNRVMFHPNALRELTFGLPLTPSDVDVVRSLAQITRKLETHGLRN
cont_0566.00000130	F066618	AGG	MDKHSRASGRPGKGKRRRLSTLEKKQRSGNEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR