Scaffold MRS1b_contig_6876082

Overview

Basic Information

• Taxon OID: 2162886011
• Scaffold ID: MRS1b_contig_6876082
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000274	Metagenome / Metatranscriptome	1399	Y
F002183	Metagenome / Metatranscriptome	586	Y

Sequences

Protein ID	Family	RBS	Sequence
MRS1b_0600.00001660	F002183	N/A	HLAKHVPIPNIAAQEVSVEIILTWSQDPVIPPDAPRTGRELEVFHIASAFLQNASVNAVDCDVVMEISQIADKSSSRMIVETPVDSEYCSARQNIQAQLKRYGFRLDSQHGGELPQALPVDVVGMAFEDFEHDRGPVATLWELHPAIVTLH
MRS1b_0600.00001670	F000274	GGAGG	MMNLRIVTGVIALFVFAGAAGVATAQETTKTTHKKTRTLTGCLQKGEDANEYNFTAKGGSTWEIKSDSVKLDEHVGHTVKITGVVANATAHGMKEDTKEEMKEHGMNKHDTEHGHMTVTDLTMVSDSCQK