Scaffold SwRhRL2b_contig_5937

Overview

Basic Information

• Taxon OID: 2162886007
• Scaffold ID: SwRhRL2b_contig_5937
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001566	Metagenome / Metatranscriptome	670	Y
F011085	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
SwRhRL2b_0513.00005280	F001566	GAGG	MTLDLRGKKVIVINGKHSIGRAIAEAVAREGADVVIWLRKGDDELNEAKVLSTTQLKVPPQQSNGAAPFSLWRQAMGRKSYW
SwRhRL2b_0513.00005290	F011085	N/A	MNSETSENGSDSSNGRTLKIRVAAAGTSKESGQLRSAGPVSQEARNLEVARIAYKPLQTEEHDLAVQRRRDDLARLLIKIRRGEAGYALAKKFLDENQGLPPETEG