Scaffold SwRhRL2b_contig_3938580

Overview

Basic Information

• Taxon OID: 2162886007
• Scaffold ID: SwRhRL2b_contig_3938580
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2553
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004395	Metagenome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
SwRhRL2b_0550.00000430	F004395	AGGAG	MHRILFLFIVLAALASFPVRAQEVEDTIKIKTRVVFLDALVKDKKTNLPISELTTANFEVLDNGKTRNITYFSREGQARKPLALILILDLREDGAGRFMKRPEILKSMEDELAKLPPGDEVAIMAMDTNENEERFWLTEFTNDRTKLAAALARVPALSVSHEGQLPEGAVQVKEKPADTAATTAEGKPDDIIETETIRGKNGATIIRKTHRDGSVNVTRTNKDGKMTIELGDVYDMAAAVKDATRKAAETRPNSQVSVVWVSDGIAPIFFEDRDATEQILIRDNVIFNSLTVDMRTLFKFLVPMAKPLTSWMGLSLYGSAKYLAQRSGGEAVKVARVKDYGAGLSRIIGNLTARYSLGFALAE