Scaffold 2157468620

Overview

Basic Information

• Taxon OID: 2156126001
• Scaffold ID: 2157468620
• Source Dataset Name: Compost microbial communities from Sao Paulo Zoo, Brazil - C5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Sao Paulo, Virginia Bioinformatics Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 516
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038003	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
2157165638	F038003	N/A	DVALVPEMTVQPVPDVTTSLLVDQKVPTNSHLTSFRLDLNPPNDLALAGALIEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSVCWDFSGLGNPSAMRDFMTACDYCLSDCFDGSRSLGDESCGPSRECFHIELGDPSKGNHLGMPEDGDLPRPVPRADIPRELAV