Scaffold NODE_26003_length_1783_cov_7.297812

Overview

Basic Information

• Taxon OID: 2140918024
• Scaffold ID: NODE_26003_length_1783_cov_7.297812
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1833
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013964	Metagenome	267	Y
F024934	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
B_all_v_01341730	F013964	AGGAG	MHDDTDLLIPDYDPYNPKPYPREIKPGCYCEAKVKRLLKKHKDNPEALQFLRDMLED
B_all_v_01341750	F024934	AGGAGG	MSENAEFAKRIIKMRIKYVLERSQGQILDEKKLRNIAIKVKQGESQPDITKEIQKLTFNGIEKAKPLLKDVIKQLLDEYIQTIKDITDEAIGEMVNSEIQKIIKE