NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_209741_length_1180_cov_11.294915

Scaffold NODE_209741_length_1180_cov_11.294915


Overview

Basic Information
Taxon OID2140918024 Open in IMG/M
Scaffold IDNODE_209741_length_1180_cov_11.294915 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1230
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004241Metagenome / Metatranscriptome447Y
F094344Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
B_all_v_00352140F094344GGAGGMKTRHVVALSMLVGLALGALAVQGLHAEDTYIRNLPLDAWTVPVPVPIIPPGSTLDLRPTRSPDATDQMTGYTPATKDQTTPSIGLSIKAPLDDRK
B_all_v_00352150F004241N/ASTMPSTINLQLILVWFCVGFFTGAGWAIAATLVGRILSVI

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