Scaffold NODE_175149_length_1210_cov_12.033058

Overview

Basic Information

• Taxon OID: 2140918024
• Scaffold ID: NODE_175149_length_1210_cov_12.033058
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1260
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F001997	Metagenome / Metatranscriptome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
B_all_v_02569050	F000335	N/A	MPGNLQSASPNGVMPASLCTAFTELREYAQLQNQYRDGTIQRSQLAQTSRRTFRLSKRLCAADLGTLYAFWVAKQGGLIPFAFYNPFEVAAGHDIGSNYDPTGNGTQGRVTVVFRGAWTQATDVCRTNVQGLELVEV
B_all_v_02569070	F001997	N/A	SQFGGSVSVAVRSPSVRQLVMLYSEATGQKMPLSATTPYAGSLVEQGGSLYQQASFQNNAWHMYGSNLPTLGGIPGTVYPTPGGPNTAPGGGVTNIALNINGQPITPEFVTDQSMAAQGSSYGRTQQAANMQVPGLMVA