Scaffold ConsensusfromContig186550

Overview

Basic Information

• Taxon OID: 2140918008
• Scaffold ID: ConsensusfromContig186550
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012633	Metagenome / Metatranscriptome	279	Y
F092930	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Bog_all_C_03482860	F012633	N/A	ELLVMLIVPPIVGVVTYIIIRRIWERDENGASEAVRRRDPSAATAA
Bog_all_C_03482880	F092930	N/A	VLDVGKHIGRIMLHPQAPAGMPWFWTITARVPQYPHDRGYAATREEAMADFKAAWEREP