Scaffold ConsensusfromContig185788

Overview

Basic Information

• Taxon OID: 2140918008
• Scaffold ID: ConsensusfromContig185788
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4918
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079367	Metagenome	116	Y
F106196	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Bog_all_C_05326220	F079367	AGGTGG	MKIPSLRGGIAGEKFRHKDDIAWWMKRYESLTTTEAEDIIRKAMAMLNDAVVLRDQALDLVAQLDQDINEAEDEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKRPRP
Bog_all_C_05326260	F106196	AGGAGG	MAEDDEQNEIIKCTVTCPECGGEIVCSHEDAKHEGKHRCEKGHEWT