Scaffold ConsensusfromContig47406

Overview

Basic Information

• Taxon OID: 2140918006
• Scaffold ID: ConsensusfromContig47406
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1005
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007516	Metagenome / Metatranscriptome	349	Y
F013724	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
P1_C_00718880	F007516	AGGAGG	MYRRINPASQQQLPMRMLFQPLGNGTFHRACEADSFRGLVAAMLDDPAYESGDVETRLLNRLRLADELVLLARIENEPSVLIGDKDADQTINVASDERLIRSLDRLGLVSLEPTLSVGGTRT
P1_C_00718890	F013724	GGTGG	MGAGQFEEAQSVNELASRVGASHGFGLNYGNLLDSRRTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHAGGQVTDSDDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRVA