NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KansclcFeb2_ConsensusfromContig518350

Scaffold KansclcFeb2_ConsensusfromContig518350


Overview

Basic Information
Taxon OID2124908045 Open in IMG/M
Scaffold IDKansclcFeb2_ConsensusfromContig518350 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.1049Long. (o)-96.6054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F007262Metagenome / Metatranscriptome354Y
F021376Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
KansclcFeb2_04497090F007262N/AVLIVAAGLWVKQYRTTRQRAGIYPVDRFGGWASEAAGPATAFFLILTAFLTAFAVVLVVSHLIWGQRF
KansclcFeb2_04497100F002111GGAMAPAPPFVAYSSLTETLVPASEWQAVYGSLQALKGHVQEYPGCQRFDVFTRVEQGDDVRIHCYTTWDTPTQLEAFLERGYTFERLLADLGESLEPERSLIMEKVF
KansclcFeb2_04497110F000280AGAAGGMEEPEDRAQRQARPARPLLGYRDVGEDVRWSRQAHVRAWVILAVMIALSLGWMLTVYFIEPGLR
KansclcFeb2_04497120F021376GGCGGVYLKHLSSLEFLTYVAFFTIVVASLWRLLPGKAPPVRTVPHSDEQLGAHDRKLAKY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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