Scaffold Perma_A_C_ConsensusfromContig85680

Overview

Basic Information

• Taxon OID: 2124908032
• Scaffold ID: Perma_A_C_ConsensusfromContig85680
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1331
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040393	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Perma_A_C_02841770	F040393	AGCAG	MDADDSVPATPFGGAAVGTVLGPLDFTVSEQANVRYWSAAGLDHSVLRAGALYPPIAGNLTILLFQTIAEQPMLQTAQHLVCHRRANAGMPLTVSGTVAERYEKRGRQYAVVEARIALADGPLVWTSRATFTEVAR