Scaffold OU_2_1_1_newblercontig110874

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OU_2_1_1_newblercontig110874

Scaffold OU_2_1_1_newblercontig110874

Overview

Basic Information
Taxon OID	2124908016 Open in IMG/M
Scaffold ID	OU_2_1_1_newblercontig110874 Open in IMG/M
Source Dataset Name	Sample 642
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Los Alamos National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	542
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → → Environmental Microbial Communities From Lanl

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021616	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
OU_00303620	F021616	N/A	DAYMVGDADASSVEPVVNPGLGEARRRRLIRMTKEQIAGRAGPLRQVRQRDRVVSPLALELECRKLLQRAQRAIATIVTSRVYAGDLRGCRGGTCPAAA

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