Scaffold OU_2_1_1_newblercontig06304

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OU_2_1_1_newblercontig06304

Scaffold OU_2_1_1_newblercontig06304

Overview

Basic Information
Taxon OID	2124908016 Open in IMG/M
Scaffold ID	OU_2_1_1_newblercontig06304 Open in IMG/M
Source Dataset Name	Sample 642
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Los Alamos National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	910
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → → Environmental Microbial Communities From Lanl

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009438	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
OU_02094340	F009438	N/A	MMEAMRRFALYGLGLLLAALLALTYTTSSRAKSGGPVSHTCSVTDRAFIDGAKTNIDAVDLWGQQYLDGDAGPGEVADEAARAAKIVGATSPTDPSLAQTRSLLVAMFTAYRQAMEQRAKHRDAGDHIFHAYGLANFAHDVLLSAEPALAKRGCDVSALL

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