NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FNTS067_GJ87FRN01CL38A

Scaffold FNTS067_GJ87FRN01CL38A


Overview

Basic Information
Taxon OID2119805012 Open in IMG/M
Scaffold IDFNTS067_GJ87FRN01CL38A Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site NTS_067 Nevada Test Site
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameUSA: Nevada, FACE Site NTS_067 Nevada Test Site
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087716Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
FNTS067_03925960F087716N/ALREGTAMTRDEIEALVARERPGWRVVDFIAVNDESGPGFEVTIESGGRQTTLIVAEGRRIVGERR
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Institute for Fundamental Biomedical Research
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