Scaffold ASMM170b_contig01034__length_1142___numreads_19

Overview

Basic Information

• Taxon OID: 2100351011
• Scaffold ID: ASMM170b_contig01034__length_1142___numreads_19
• Source Dataset Name: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1142
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0678
  • Long. (^o): -145.54687

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N
F090428	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
ASMM170b_02764910	F090428	N/A	MSKKLITDELINEMLEARGFGEKQINDEDLAKEAVLKHFSVELTDDYSGNADFYIYEESTADGYSVFVATHDQRVVNVNETY
ASMM170b_02764920	F003647	N/A	MVMCEWTLADVKNRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ
ASMM170b_02764930	F005817	N/A	MRSNLLSRLKPEFKQGLEDNKTKYPASIHDLEFVLGQLTFYNDLTVNQVLNLFLFSDMEYRDRKSFDWRFGDDAFEVENNVA
ASMM170b_02764940	F082713	N/A	MKIKGLTEQDCAFVYYVLRDWSQNHSNYDEQDVDDVYEIAKKFKMY