NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ASMM170b_contig00217__length_2023___numreads_42

Scaffold ASMM170b_contig00217__length_2023___numreads_42


Overview

Basic Information
Taxon OID2100351011 Open in IMG/M
Scaffold IDASMM170b_contig00217__length_2023___numreads_42 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)74.0678Long. (o)-145.54687Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
ASMM170b_01411960F005129N/AMKYKVKIESRTLSINLMHHSTVDLGVFSVKATTHSFLFDGLKTEWGADINETEFEFYVNDKRCRYVGFKELYIQLYGDSFNTFEVDLTRQIEEVVAKRIAKEYPGCDVNF
ASMM170b_01411980F061271N/AMIHELEKVVHQWCDDNDRWMYIEYDNDGMVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFAYEQKNVPEHCFINSCMWSYHSAISEYEDNNCEIGNATKCYANKCCKAISGR

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