Scaffold BSEYNP_contig06978__length_988___numreads_6

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold BSEYNP_contig06978__length_988___numreads_6

Scaffold BSEYNP_contig06978__length_988___numreads_6

Overview

Basic Information
Taxon OID	2100351008 Open in IMG/M
Scaffold ID	BSEYNP_contig06978__length_988___numreads_6 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	988
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Norris Geyser Basin, Yellowstone National Park
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.708917	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
BSEYNP_01375750	F067921	N/A	QGTKHNFTTLYYNFATEVSNFLPMAPFGGQASSTTSPPYITNFKFSLQLVQNVTDMFDLSRNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSQSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQEIKKAILAGFPVRTLGAVDSAIPVSRDNYPGLQTVTYKEVYGGGS
BSEYNP_01375760	F027904	GGAGG	VECKYDPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNAAVYAPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.