Scaffold MXTR_Contig8449

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MXTR_Contig8449

Scaffold MXTR_Contig8449

Overview

Basic Information
Taxon OID	2088090020 Open in IMG/M
Scaffold ID	MXTR_Contig8449 Open in IMG/M
Source Dataset Name	Sample MX_TR1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Research Council of Canada
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	775
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Endoperitrophic Space → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location Name	Fairbanks, Alaska
Coordinates	Lat. (^o)	64.880776	Long. (^o)	-147.869984	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050073	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
MXTR_00214100	F050073	N/A	LFWTGIWDYFLYTISCQLLGGGCTGTPKKRPIECYRGQVLNEDLPELKELLEKYRDGDDHEFADYLGDMVDKKEYKEGRAENEEDSNLLGKCGMHPKYQPYECYEPHVLRRNRKELKNAYDTLHAEKLGEFNAIYERLVEAKFAYFG

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