Scaffold MXTR_Contig31200

Overview

Basic Information
Taxon OID	2088090020 Open in IMG/M
Scaffold ID	MXTR_Contig31200 Open in IMG/M
Source Dataset Name	Sample MX_TR1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Research Council of Canada
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1661
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum

(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Endoperitrophic Space → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location Name	Fairbanks, Alaska
Coordinates	Lat. (^o)	64.880776	Long. (^o)	-147.869984	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018657	Metagenome / Metatranscriptome	233	N

Family

Category

Number of Sequences

3D Structure?

F018657

Metagenome / Metatranscriptome

233

Protein ID	Family	RBS	Sequence
MXTR_00062220	F018657	N/A	MSDKNKKEEPQVDPVEDFNENCKKHLSSNEKHIWLCYDCRKFTCTKCYARDHKQCWADLTENMYDEMKKTNESNLEAIRGMRNEFAEEVDFMERKYEYFLDNNPFDMNIKLVNKIYDNIIELVNQKRDDTLKRMVALKDNYQKNITQNIEKIKDMIKKSDDIDRRINAELRKMAGQQPFEFCRDLLDTNVSSDLADECNDINIFQKQEFTRIKQSFIDTNTIVFNDSNALIDHCKTFREYISEKINNFFQNYTKYMSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMIYKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSPVYFQGKYIIFDFLNNIHELNLETLQFEYHVFHKGGDEIP

Protein ID

Family

RBS

Sequence

MXTR_00062220

F018657

N/A

MSDKNKKEEPQVDPVEDFNENCKKHLSSNEKHIWLCYDCRKFTCTKCYARDHKQCWADLTENMYDEMKKTNESNLEAIRGMRNEFAEEVDFMERKYEYFLDNNPFDMNIKLVNKIYDNIIELVNQKRDDTLKRMVALKDNYQKNITQNIEKIKDMIKKSDDIDRRINAELRKMAGQQPFEFCRDLLDTNVSSDLADECNDINIFQKQEFTRIKQSFIDTNTIVFNDSNALIDHCKTFREYISEKINNFFQNYTKYMSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMIYKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSPVYFQGKYIIFDFLNNIHELNLETLQFEYHVFHKGGDEIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters