NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16807235

Scaffold GPIPI_16807235


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16807235 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043048Metagenome157Y
F071596Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
GPIPI_01249090F043048GAGGMPSSDVQNTSWKEVSEELNRWHCLMAKYQGQFRSAGRGDTAEDLERC
GPIPI_01249110F071596AGGMERVEIAELFYNALINLNDLEKLPHFLSARVQWTLSAADPHTAGEESPPNAIKFYGKEGCRQLALYFHEKLKVFSGDLTGCISHHHLVFVFGTLRLGGPVPDKFAETNIAGRLTFRGSKIIKGQIRISWPLVF
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