Scaffold LWAnN_GIDYKCY01ENLA7

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LWAnN_GIDYKCY01ENLA7

Scaffold LWAnN_GIDYKCY01ENLA7

Overview

Basic Information
Taxon OID	2088090009 Open in IMG/M
Scaffold ID	LWAnN_GIDYKCY01ENLA7 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	511
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle, Washington, USA
Coordinates	Lat. (^o)	47.07	Long. (^o)	-122.27889	Alt. (m)		Depth (m)	62
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013001	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
LWAnN_04152590	F013001	N/A	GKKKKFDLGRDGTITCHLSEDERRLLIEFDVPKEGLSKAGVNGLIDALKKIRDRMSR

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