Scaffold ASA129_GJG7ZZE02GM8QF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ASA129_GJG7ZZE02GM8QF

Scaffold ASA129_GJG7ZZE02GM8QF

Overview

Basic Information
Taxon OID	2084038021 Open in IMG/M
Scaffold ID	ASA129_GJG7ZZE02GM8QF Open in IMG/M
Source Dataset Name	Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 9-12 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	528
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing

Source Dataset Sampling Location
Location Name	Santa Barbara Basin
Coordinates	Lat. (^o)	34.21	Long. (^o)	-119.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036102	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
ASA129_01050640	F036102	AGGAGG	MDEQKMKELFRATANVQTPEGLAAYQAFAAALTIPILEKIELESIMRQLFTVEPLEPGAQASYPVAEDFEIPVWVLPGLGYIAQNFIEGIGEDVVVPTFT

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