Scaffold DBS_contig16778

Overview

Basic Information

• Taxon OID: 2084038005
• Scaffold ID: DBS_contig16778
• Source Dataset Name: Acid Mine Drainage metagenome from Dabaoshan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Sun Yat-Sen University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Acid Mine Drainage → Acid Mine Drainage Microbial Communities From Yunfu, Dabaoshan, And Foukou, China, Of Pyrites, Lead-Zinc Tailings, And Polymetallic Ore

Source Dataset Sampling Location

• Location Name: Shaoguan,China
• Coordinates
  • Lat. (^o): 24.61435
  • Long. (^o): 113.6714

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042121	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
DBS_00034920	F042121	AGG	MKESVSTFPVKRRRRSSAEVAALLSAFEQSGQSIRDFCRQHQMQVSSFSSLHRRHAGKHSSARSLPTAEHHATATTAFFPVEIVEDRRMSTVAVKSSGLIVEMAGGIRITVERDFDGLTLRHLMAVLCEA