Scaffold ADL20m3uS_contig13492

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ADL20m3uS_contig13492

Scaffold ADL20m3uS_contig13492

Overview

Basic Information
Taxon OID	2081372007 Open in IMG/M
Scaffold ID	ADL20m3uS_contig13492 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	993
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location Name	Deep Lake Antarctica
Coordinates	Lat. (^o)	-68.54	Long. (^o)	78.18	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051583	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
ADL20m3uS_00838050	F051583	GGA	MDYTNPEDAANIDEPTHQQEIGLLSGLVDGTFVCVNHRGFLVNRTDKGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA

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