Scaffold ADL20m3uS_contig13141

Overview

Basic Information

• Taxon OID: 2081372007
• Scaffold ID: ADL20m3uS_contig13141
• Source Dataset Name: Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location

• Location Name: Deep Lake Antarctica
• Coordinates
  • Lat. (^o): -68.54
  • Long. (^o): 78.18
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F007732	Metagenome	346	Y

Sequences

Protein ID	Family	RBS	Sequence
ADL20m3uS_00143650	F006455	GGAG	MNQQVKPPAGWTEIEPEFEFQQQTFQRRRDGLVVAIEREGMSCYNVVTLPENYYQDNQVIDCVEVGVEPEDAAETAHEWMEQNNRQ
ADL20m3uS_00143660	F007732	GGA	MSDEIIVSSTEALYDDYDNLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVDLLVHRSYDPELHFRLRMTEVLGGFADTDCLTIEEIGEKA