Scaffold FNTS_contig03054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FNTS_contig03054

Scaffold FNTS_contig03054

Overview

Basic Information
Taxon OID	2081372006 Open in IMG/M
Scaffold ID	FNTS_contig03054 Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site NTS_071 Nevada Test Site
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	830
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Nevada Test Site
Coordinates	Lat. (^o)	36.766667	Long. (^o)	-115.95	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042091	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
FNTS_04122630	F042091	GGAG	MSHTGDCPVGRSQLFTFKAKETITVDRPTLEHIFALLNGCSANFKYLCDNDIFVFATKNYLASLDESGKALNLLGVWTDTWPDASEELADGLDEAVQSIKFILVATAGGRND

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