Scaffold BRPC3_GDEZLPW01CSREA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BRPC3_GDEZLPW01CSREA

Scaffold BRPC3_GDEZLPW01CSREA

Overview

Basic Information
Taxon OID	2077657009 Open in IMG/M
Scaffold ID	BRPC3_GDEZLPW01CSREA Open in IMG/M
Source Dataset Name	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Source Dataset Sampling Location
Location Name	University of Illinois Dairy Farm in Urbana, IL
Coordinates	Lat. (^o)	40.0886	Long. (^o)	-88.2202	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046769	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
BRPC3_02861020	F046769	GAGG	MLTNTSLTIYHKGYDDFERIETWQRFNYENVWMFGGKGASLNKGFTDSNDVQVRIPYDKNENLNIDNFAIGDIIVEGNLSEDIETQQDLEDYLVYNITSITNNTYGINKHIHLGGK

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