Basic Information | |
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Taxon OID | 2046860007 Open in IMG/M |
Scaffold ID | LWAeNNiSIP_GDP3C2T02G6Z6Y Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - Microc enrich af exp to meth lab w 13Ccarbon-no added nitrate |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 530 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Washington, Seattle, Washington, USA | |||||||
Coordinates | Lat. (o) | 47.07 | Long. (o) | -122.27889 | Alt. (m) | Depth (m) | 62 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031100 | Metagenome / Metatranscriptome | 183 | Y |
Protein ID | Family | RBS | Sequence |
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LWAeNNiSIP_3623920 | F031100 | N/A | MSDAPSSLDTAKYRHLVLDSLAAIQGFQVPEYDDLVVTYYGATNNIATVTYKKASVVVATLTLLYSVQP |
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