Scaffold FACENC_GAMC6GA01CFRNE

Overview

Basic Information

• Taxon OID: 2040502001
• Scaffold ID: FACENC_GAMC6GA01CFRNE
• Source Dataset Name: Soil microbial communities from sample at FACE Site 2 North Carolina CO2+
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 508
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location

• Location Name: Orange County, North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -80.934
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073919	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
FACENCE_4264540	F073919	AGGAGG	MAKKIREFMTHREPNEHIWVERDESAVIGTARMGQRMVPKIRPFDLLRSAPRSGNCARVTVWEGDSLRIA