Scaffold FACENCT_F37DT1O01B7YPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FACENCT_F37DT1O01B7YPS

Scaffold FACENCT_F37DT1O01B7YPS

Overview

Basic Information
Taxon OID	2035918005 Open in IMG/M
Scaffold ID	FACENCT_F37DT1O01B7YPS Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	543
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Nevada Desert Research Center
Coordinates	Lat. (^o)	36.766667	Long. (^o)	-115.95	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062444	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
FACENCTE_6157420	F062444	AGGAGG	LLLIRSLSGLRPRFALILALVLLASGFTIPAVAQTDQESDQEGESGETDQSGEVLNEGDNSNQCVAVQPVSNTGNAITDLDIVIQLPTGEQQIKRHDRNYVLDLIDELDLDLEDIGSTIELDPEQAVECAQAVDQAATASDDS

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