NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ErSWdraf_F5BXKTZ02FX6ON

Scaffold ErSWdraf_F5BXKTZ02FX6ON


Overview

Basic Information
Taxon OID2035265000 Open in IMG/M
Scaffold IDErSWdraf_F5BXKTZ02FX6ON Open in IMG/M
Source Dataset NameFreshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterRoyal Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.84Long. (o)18.63Alt. (m)Depth (m)0 to 2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061836Metagenome131Y
F077298Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
ErSWdraft_6751000F061836AGCAGMARLIPRKQIEEQQDISASLSIRENVYVGQDAIISGSLFVSQSFFLGNDTGSKSEITGSVFLTGSLTIDGILKTSAPNTILSVTSSNSLLAVDTQRYA
ErSWdraft_6751030F077298N/AMVLVHCYINLLNKRFIKDILEIDDVKDYIDVYLFGVKQPQDRYTIDFDATNIYVTFTVNITRLPGDVVRTDFEIKGKIAEII

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