Scaffold 2008222525

Overview

Basic Information

• Taxon OID: 2008193001
• Scaffold ID: 2008222525
• Source Dataset Name: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 755
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location

• Location Name: Arthur Harbor, Palmer Station, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.766667
  • Long. (^o): -64.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004613	Metagenome / Metatranscriptome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
2008228706	F004613	N/A	MVLNVVKKLNLNTEDLKRQKNIISKLNLAKLPFNISPDKICALNLEMARHSSAVLKYQEDKSGIKWIFSSIKKYKVFLIIFESNELGEEIYKEKISSKLPEYSYKTVAQIVDDGIKKNFFIKLDARAKITKDLKIRNVRPSEEVIIEFINWKIDLLSSLMKFKQDLIN