NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2008208295

Scaffold 2008208295


Overview

Basic Information
Taxon OID2008193001 Open in IMG/M
Scaffold ID2008208295 Open in IMG/M
Source Dataset NameMarine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location
Location NameArthur Harbor, Palmer Station, Antarctic Peninsula
CoordinatesLat. (o)-64.766667Long. (o)-64.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094406Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
2008210565F094406AGGAMFTKVSAVRPYWSEIREKMWNHISVAGFTIDGADIIGVNDSDDQIMSALKTRKDHILLVPYNASASSETAMKTGLDIVFSVNENIKILAESPIIMPVANALTSALRQKLAQEREGGRLTPELDERILFIAESDLNRPELGGIL

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