Basic Information | |
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Family ID | F106147 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 58 residues |
Representative Sequence | MTDYAAVLTANYPNAQWTLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAA |
Number of Associated Samples | 64 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 38.00 % |
% of genes from short scaffolds (< 2000 bps) | 36.00 % |
Associated GOLD sequencing projects | 46 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.73 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (85.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (49.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (50.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (86.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 36.05% β-sheet: 6.98% Coil/Unstructured: 56.98% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.73 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Aqueous Freshwater To Marine Saline Gradient Salt Marsh Estuarine Water Saline Water And Sediment Saline Water And Sediment Hypersaline Lake Sediment Marine Methane Seep Sediment |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI11705J14877_100871533 | 3300001419 | Saline Water And Sediment | MTDYAAVLVANYFGSQWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQQAQADAVAAKEAA |
JGI11772J19994_10285821 | 3300001748 | Saline Water And Sediment | MTNYAAVLTANYPDAEWTLNGEDYDGLTWLSDNPKPSQAELDAAWPAVQQAQHDAV |
JGI11772J19994_10476392 | 3300001748 | Saline Water And Sediment | MTNYPAVLLKLYPDSQWSLRGDTYDGLTWLSDTPKPXQAXXXAAWPAVQQAQADAVAAK |
Ga0074648_11148121 | 3300005512 | Saline Water And Sediment | MTDYAAVLVANYFGSQWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQQAQADAVAAKEAARQSAIS |
Ga0075474_102175392 | 3300006025 | Aqueous | MTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAA |
Ga0070749_102912052 | 3300006802 | Aqueous | MIDYPAILKANYAGSEWTLDGDTYDGLTWLSDTPKPSQQELDDAWPAVQQARQEADIDRQRHAAYV |
Ga0070749_104459772 | 3300006802 | Aqueous | VTDYSAVLTANYSDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAEAAKVAA |
Ga0070754_102968941 | 3300006810 | Aqueous | VTDYTAVITANYPDAEWTLNGDTYDGLNWLSDTPKPSQAELDAAWPAVQQARQDAVAAKE |
Ga0070754_103492621 | 3300006810 | Aqueous | MTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARQDA |
Ga0075476_100940553 | 3300006867 | Aqueous | VTDYAAVLTANYPDTSWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQ |
Ga0075476_101473412 | 3300006867 | Aqueous | VTDYAAVLTANYPDDLWNLDGDTYDGLTWLSDTPKPSQAELDDAWPTVQQARQDAVAAKEAARASG |
Ga0070750_104893141 | 3300006916 | Aqueous | MTDYAAVIRANYPDAEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQQAQADAVAAREAAKQS |
Ga0070746_102133501 | 3300006919 | Aqueous | MIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTVQYNDEVAAVEEA |
Ga0070746_103570911 | 3300006919 | Aqueous | MTDYTAVLLATHPGAQWSLSGNDYDTLIWHDNTPKPTQAELDAAWPAVQQARQDAVAAKQAARQSAI |
Ga0070746_105455702 | 3300006919 | Aqueous | MTDYAAVLTANYPDALWTLDGDNYDGLTWLSDTPKPTQAELDAAWPAVQQARQDAVAAKE |
Ga0075460_101008761 | 3300007234 | Aqueous | VIDYAAVLSENYPNALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQS |
Ga0070745_12095732 | 3300007344 | Aqueous | MTDYAAVLTANYPDAEWSLAGDSYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVATKEAA |
Ga0070752_10685991 | 3300007345 | Aqueous | VTDYAAVLTANYPGSEWTLDGDTYDGLTWLGDTPKPTQAELDAAWPAVQQAKA |
Ga0070753_100481710 | 3300007346 | Aqueous | MIDYAAVLAANYPDAEWTLDGDSYDGLTWLSDSPKPSQAELDAAWPAVQ |
Ga0070753_11918622 | 3300007346 | Aqueous | VTDYPAVLIKLYPDCQWSLRGDIYDGLTWLSDTPKPTQQALDDAWPAVQQ |
Ga0070753_12198742 | 3300007346 | Aqueous | MTDYAAVLAANYAGTKWTMDGDHYDGLNWLDDTPKPSQAELDDAWPQVQYEQ |
Ga0070753_13626882 | 3300007346 | Aqueous | MIDYAAVLTELYSSSCWSLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQQQADAVAAKE |
Ga0099851_12496813 | 3300007538 | Aqueous | MTDYAAVLSKNYPAAMWKLDGDAYDGLTWLSDSPKPSQAELDAAWPAVQQARQDAVAAKQAARQS |
Ga0099849_12086462 | 3300007539 | Aqueous | VIDYAAVLTANYSDDEWTLTGNDYDTLEWRSDTPKPTQAELDAAWPAVQQAQTDAVAAKE |
Ga0099849_12731692 | 3300007539 | Aqueous | MIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTV |
Ga0070751_12909893 | 3300007640 | Aqueous | MTDYAAVLTANYPGSEWTLDGDTYDGLTWFSDTPKPTQQELDDAWPAVQQARQDAVAAEAAA |
Ga0099850_11390382 | 3300007960 | Aqueous | VTDYLAVLIANYSDVGWTLNGDTYDGLTWLSDTPKPLQAELDAAWPAVQQAAQDVVAAKEAAR |
Ga0099850_12616812 | 3300007960 | Aqueous | MTDYAAVLVANYPDAEWTLNGDTYDGLTWLSDSPKPTQQELDDAWPAV |
Ga0099850_12641732 | 3300007960 | Aqueous | VTDYAAVLTANYPGAQWTLRGDNYDGLTWLSDTPKPTQQELDAAWPAVQQARQDAIAAEAAAK |
Ga0075480_104554243 | 3300008012 | Aqueous | MIDYAAVLVANYPGSEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQQ |
Ga0105097_105826792 | 3300009169 | Freshwater Sediment | MSTNYPAVLIANYPSAQWTLEGDTYDGLTWLSDTPKPTQAELDAAWPQVQYANQC |
Ga0136656_12697331 | 3300010318 | Freshwater To Marine Saline Gradient | MTDYAAVLAANYPDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAIAAEAAAKQSA |
Ga0136549_102319061 | 3300010389 | Marine Methane Seep Sediment | VTDYAAVLTANYPDAEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPNVDYNNQVAAVE |
Ga0136549_102501162 | 3300010389 | Marine Methane Seep Sediment | MTDYAAVLTANYPDASWTLNGDTYDGLTWLSDTPKPTEAELDAQWPQVNYDNQVAAVENA |
Ga0182074_14652113 | 3300016735 | Salt Marsh | AVIRANHPGSEYVLVGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAG |
Ga0182082_12032622 | 3300016771 | Salt Marsh | MTDYSAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARIDAQVAKQ |
Ga0181584_108520722 | 3300017949 | Salt Marsh | MIDYAAVLTANYAGAQWSLTDNDYDTLDWLSDSPKPTQAELDAAWPAVQQQQADAVTAKEAARQS |
Ga0181577_100655081 | 3300017951 | Salt Marsh | MTDYAAVLAANYSGAQWTLSGNDYDSLVMHDDTPKPTQAELDAAWPAVQQAKADAEAAEAASKQSAIDKL |
Ga0181583_103595611 | 3300017952 | Salt Marsh | MTDYSAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARIDAQ |
Ga0181583_105793092 | 3300017952 | Salt Marsh | VIDYTAILTANYEGSAWSLNGDTYDGLTWLSDTPKPTQQELDDAWPAVQQA |
Ga0181582_105682911 | 3300017958 | Salt Marsh | VTDYAAVLTVNYADSLWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARIDAQVAKQATKQSA |
Ga0181581_106399321 | 3300017962 | Salt Marsh | MTDYAAVLSSNYPDAEWTLNGDTYDGLTWLSDAPKPSQAELDAAWPTVQYEQQ |
Ga0181589_102405331 | 3300017964 | Salt Marsh | MTDYPAVLTANYPDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAIAAE |
Ga0181589_106007162 | 3300017964 | Salt Marsh | VTDYAAVLTANYPDDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDA |
Ga0181590_104169761 | 3300017967 | Salt Marsh | MTDYAAVLSSNYVGFEWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQYQQQRAAIEAQ |
Ga0181587_105315931 | 3300017968 | Salt Marsh | VIDYTAILTANYEGSAWSLNGDTYDGLTWLSDSPKPSQEELDAAWPQVQYQQQ |
Ga0181587_108135072 | 3300017968 | Salt Marsh | MTDYAAVLSSNYVGFEWTLNGDTYDGLTWLSDSPKPTQQELDDAWPAVQYQ |
Ga0181587_109285652 | 3300017968 | Salt Marsh | MIDYAAVLTANYEGSAWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVQYEQQRAE |
Ga0181576_107952301 | 3300017985 | Salt Marsh | MTDYAAVLTANHPDAEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQQARADAQAAKEATK |
Ga0180431_103935251 | 3300017987 | Hypersaline Lake Sediment | MTNYAAVLIANYPGAERTLDGDTYDGLTWLSDSPKPSQAELDAAWPQVQY |
Ga0181579_104215341 | 3300018039 | Salt Marsh | MTDYAAVLSSNYPDAEWTLNGDTYDGLTWLSDAPKPSQAELDAAWPTVQ |
Ga0180433_105345871 | 3300018080 | Hypersaline Lake Sediment | MTDYAAVLGALYAGSEWTLAGDSYDGLMWLSDGPKPSQGELDAAWPAIKAARDLEAVQ |
Ga0181592_104980531 | 3300018421 | Salt Marsh | MIDYAAVLTANYEGSAWSLNGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARIDAQVAKQATKQ |
Ga0181593_103169561 | 3300018423 | Salt Marsh | MTNYPAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPTVQQAEADAVAAKQAARQSA |
Ga0181591_104628922 | 3300018424 | Salt Marsh | VTDYATVLVANYPDAEWTLNGDTYNGLTWLSDTPKPTQQELDAAWPAVRQARQDAEAAKV |
Ga0181591_104973052 | 3300018424 | Salt Marsh | VTDYAVVLTANYPNDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDA |
Ga0181591_106500162 | 3300018424 | Salt Marsh | MSVNYKEVLVANYAGAEWTLRANDYDTLVWLSDTPKPTQQELDDAWPDVQQARIDAQVAKQATKQS |
Ga0181591_107474512 | 3300018424 | Salt Marsh | VTDYAVVLTANYPDAEWTLDGDTYDGLTWLSDTPKPSQAELDDAWPAVQQAQQDAVAAEAAAK |
Ga0181591_110394702 | 3300018424 | Salt Marsh | MIDYAAVLTANYPDALWQLDGDTYNGLTWLSDTPKPTQQELDAAWPAVRQARQDAEAAKV |
Ga0181594_102502432 | 3300020054 | Salt Marsh | MTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQQA |
Ga0181594_102662381 | 3300020054 | Salt Marsh | MTDYTAVLTANYPDAKWTLDGDTYAGLTWLSDSPKPTQAELDAAWPAVQ |
Ga0181594_102705631 | 3300020054 | Salt Marsh | MIDYAAVLTANYAGAQWSLTDNDYDTLDWLSDSPKPTQAELDVAWPAVQQQQADAIAAK |
Ga0181575_105090111 | 3300020055 | Salt Marsh | MTDYAAVLSENYPDAEWVLDGDTYDGLTWQSDTPKPTQAELDAAWPAVQQARQDAEAA |
Ga0181588_102584721 | 3300020168 | Salt Marsh | VIDYTAILTANYEGSTWSLNGDTYDGLTWLSDTPKPTQQELDAAWPAV |
Ga0222715_104959312 | 3300021960 | Estuarine Water | VTDYPAVLIKLYPDCQWSLRGDTYDGLSWLSDTPKPSQAELDAAWPQVQYEQQ |
Ga0222714_101995963 | 3300021961 | Estuarine Water | MTDYAAVLTANYLGSEWTLNGDTYDGLTWLSDTPKPTQQELDDARPAVQ |
Ga0222714_103666431 | 3300021961 | Estuarine Water | MSHIAAVLSANYRDALWTLDGDTYDGLTWQSPDIAQPTEAEIDAQWPAVQHAQQVADVE |
Ga0222714_106393591 | 3300021961 | Estuarine Water | MIDYAAVLSENYVGSEWTLNGDTYDGLTWLSDTSKPTQAELDAAWPAVQQ |
Ga0222719_101356991 | 3300021964 | Estuarine Water | MTDYAAVLTANYPDAQWTLNGDAYDGLTWLSDTPKPSQAELDAAWPAVQQARADA |
Ga0222719_102584271 | 3300021964 | Estuarine Water | MTDYPVVLATNYAGAQWSLTGNDYDTLRWYDDTPKPTQAELDAAWPAVQQAAQDAVAAQQAARQSAV |
Ga0222719_107136141 | 3300021964 | Estuarine Water | MTDYAAVLTANYPDAEWTLNGDTYEGLTWLSDTPKPSQQELDAAWPAVQQAQADAKEAKQAA |
Ga0212025_10943131 | 3300022057 | Aqueous | MTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVDYDNQVAAVETA |
Ga0212021_11217261 | 3300022068 | Aqueous | MTDYAAVLSANYSDAEWTLNGDTYDGLTWLSDTPKPTQQELDAAWPAVQQQQ |
Ga0212028_10064673 | 3300022071 | Aqueous | VTDYTAVLTANYPDAEWTLNGDSYDGLTWLSDTPKPTQAELDAAWPQVDYDRKYAAV |
Ga0196899_10995791 | 3300022187 | Aqueous | MTDYAVVLSENYPDAEWTLNGDTYAGLTWLSDSPKPTQQELDAAWPAVQ |
Ga0196905_10694963 | 3300022198 | Aqueous | MTDYAAVLTANYPNAQWTLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAA |
Ga0196905_11017201 | 3300022198 | Aqueous | MIDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPQVQYEQQRAEIE |
Ga0196905_11101692 | 3300022198 | Aqueous | MTDYTAVLTANYAGAQWSLNGNDYDSLVMHDDTPKPSQQELDAAWPAVQQARQDAIAAEAAAK |
Ga0196905_12002192 | 3300022198 | Aqueous | MIDYVAVLSENYPGSEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQ |
Ga0255764_104031651 | 3300023081 | Salt Marsh | MTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAV |
Ga0255760_101655273 | 3300023115 | Salt Marsh | MTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQQAQADAV |
Ga0255751_103100322 | 3300023116 | Salt Marsh | VTDYAVVLTANYPNDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDAQVAKQ |
Ga0255776_103993971 | 3300023173 | Salt Marsh | VTDYAAVLTANYPDDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDAQIAK |
Ga0255768_103202442 | 3300023180 | Salt Marsh | MTDYPAVLTANYPGSEWTLTGTSYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAAKEAARL |
Ga0255768_106422792 | 3300023180 | Salt Marsh | MTDYAAVLTANYPDAEWTLNGDAYDGLTWLSDTPKPSQAELDAAWPAVQQAQQDAVTAKETARQSAI |
Ga0208898_11286792 | 3300025671 | Aqueous | MTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQSGLD |
Ga0208162_10977641 | 3300025674 | Aqueous | VTNYAAVLTANYPTAQWSLSGNDYDTLVMHDDTPKPSQAELDAAWPAVQQAQADVVTAKEAAR |
Ga0208162_11380832 | 3300025674 | Aqueous | VIDYAAVLTANYSDDEWTLTGNDYDTLEWRSDTPKPTQAELDAAWPAVQQAQTDAVAAK |
Ga0208162_11665972 | 3300025674 | Aqueous | MTDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPQVQYEQQRAEIETQRRN |
Ga0208899_11450362 | 3300025759 | Aqueous | MTDYAAVLSANYSDAEWTLNGDTYDGLTWLSDTPKPTQQELDAAWPAVQQAQTDAVAAKETARQSAI |
Ga0208767_11800652 | 3300025769 | Aqueous | MIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTVQYN |
Ga0208425_10423531 | 3300025803 | Aqueous | VTDYAAVLTANYPDAQWKLDGDNYDGLTWLSDTPKPTQAELDAAWPQVNYDQQVAE |
Ga0208542_11527952 | 3300025818 | Aqueous | VIDYAAVLSENYPNALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQSGLDK |
Ga0208645_10320284 | 3300025853 | Aqueous | VTDYAAVLKANYADAEWTLDGDNYDGLTWLSDTPKPTQAELDAAWPQVDYAN |
Ga0208644_11495751 | 3300025889 | Aqueous | MTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQD |
Ga0348335_054698_3_155 | 3300034374 | Aqueous | MTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVDYD |
Ga0348335_134616_529_705 | 3300034374 | Aqueous | MTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAK |
Ga0348336_118254_681_854 | 3300034375 | Aqueous | MTDYAAVLTANYPGSEWTLDGDTYDGLTWLGDTPKPTQAELDAAWPAVQQAKADAVAA |
Ga0348336_123265_662_823 | 3300034375 | Aqueous | MTDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPSQQELDAAWPAVQQAQAD |
Ga0348336_201254_339_530 | 3300034375 | Aqueous | VTDYSAVLTANYSDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAEAAKVAARQ |
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