NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F106147

Metagenome / Metatranscriptome Family F106147

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106147
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MTDYAAVLTANYPNAQWTLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAA
Number of Associated Samples 64
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 38.00 %
% of genes from short scaffolds (< 2000 bps) 36.00 %
Associated GOLD sequencing projects 46
AlphaFold2 3D model prediction Yes
3D model pTM-score0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (85.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(49.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1JGI11705J14877_100871533
2JGI11772J19994_10285821
3JGI11772J19994_10476392
4Ga0074648_11148121
5Ga0075474_102175392
6Ga0070749_102912052
7Ga0070749_104459772
8Ga0070754_102968941
9Ga0070754_103492621
10Ga0075476_100940553
11Ga0075476_101473412
12Ga0070750_104893141
13Ga0070746_102133501
14Ga0070746_103570911
15Ga0070746_105455702
16Ga0075460_101008761
17Ga0070745_12095732
18Ga0070752_10685991
19Ga0070753_100481710
20Ga0070753_11918622
21Ga0070753_12198742
22Ga0070753_13626882
23Ga0099851_12496813
24Ga0099849_12086462
25Ga0099849_12731692
26Ga0070751_12909893
27Ga0099850_11390382
28Ga0099850_12616812
29Ga0099850_12641732
30Ga0075480_104554243
31Ga0105097_105826792
32Ga0136656_12697331
33Ga0136549_102319061
34Ga0136549_102501162
35Ga0182074_14652113
36Ga0182082_12032622
37Ga0181584_108520722
38Ga0181577_100655081
39Ga0181583_103595611
40Ga0181583_105793092
41Ga0181582_105682911
42Ga0181581_106399321
43Ga0181589_102405331
44Ga0181589_106007162
45Ga0181590_104169761
46Ga0181587_105315931
47Ga0181587_108135072
48Ga0181587_109285652
49Ga0181576_107952301
50Ga0180431_103935251
51Ga0181579_104215341
52Ga0180433_105345871
53Ga0181592_104980531
54Ga0181593_103169561
55Ga0181591_104628922
56Ga0181591_104973052
57Ga0181591_106500162
58Ga0181591_107474512
59Ga0181591_110394702
60Ga0181594_102502432
61Ga0181594_102662381
62Ga0181594_102705631
63Ga0181575_105090111
64Ga0181588_102584721
65Ga0222715_104959312
66Ga0222714_101995963
67Ga0222714_103666431
68Ga0222714_106393591
69Ga0222719_101356991
70Ga0222719_102584271
71Ga0222719_107136141
72Ga0212025_10943131
73Ga0212021_11217261
74Ga0212028_10064673
75Ga0196899_10995791
76Ga0196905_10694963
77Ga0196905_11017201
78Ga0196905_11101692
79Ga0196905_12002192
80Ga0255764_104031651
81Ga0255760_101655273
82Ga0255751_103100322
83Ga0255776_103993971
84Ga0255768_103202442
85Ga0255768_106422792
86Ga0208898_11286792
87Ga0208162_10977641
88Ga0208162_11380832
89Ga0208162_11665972
90Ga0208899_11450362
91Ga0208767_11800652
92Ga0208425_10423531
93Ga0208542_11527952
94Ga0208645_10320284
95Ga0208644_11495751
96Ga0348335_054698_3_155
97Ga0348335_134616_529_705
98Ga0348336_118254_681_854
99Ga0348336_123265_662_823
100Ga0348336_201254_339_530
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.05%    β-sheet: 6.98%    Coil/Unstructured: 56.98%
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Variant

510152025303540455055MTDYAAVLTANYPNAQWTLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.73
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
15.0%85.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Aqueous
Freshwater To Marine Saline Gradient
Salt Marsh
Estuarine Water
Saline Water And Sediment
Saline Water And Sediment
Hypersaline Lake Sediment
Marine Methane Seep Sediment
49.0%34.0%7.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11705J14877_1008715333300001419Saline Water And SedimentMTDYAAVLVANYFGSQWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQQAQADAVAAKEAA
JGI11772J19994_102858213300001748Saline Water And SedimentMTNYAAVLTANYPDAEWTLNGEDYDGLTWLSDNPKPSQAELDAAWPAVQQAQHDAV
JGI11772J19994_104763923300001748Saline Water And SedimentMTNYPAVLLKLYPDSQWSLRGDTYDGLTWLSDTPKPXQAXXXAAWPAVQQAQADAVAAK
Ga0074648_111481213300005512Saline Water And SedimentMTDYAAVLVANYFGSQWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQQAQADAVAAKEAARQSAIS
Ga0075474_1021753923300006025AqueousMTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAA
Ga0070749_1029120523300006802AqueousMIDYPAILKANYAGSEWTLDGDTYDGLTWLSDTPKPSQQELDDAWPAVQQARQEADIDRQRHAAYV
Ga0070749_1044597723300006802AqueousVTDYSAVLTANYSDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAEAAKVAA
Ga0070754_1029689413300006810AqueousVTDYTAVITANYPDAEWTLNGDTYDGLNWLSDTPKPSQAELDAAWPAVQQARQDAVAAKE
Ga0070754_1034926213300006810AqueousMTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARQDA
Ga0075476_1009405533300006867AqueousVTDYAAVLTANYPDTSWTLDGDTYDGLTWLSDSPKPSQAELDAAWPAVQ
Ga0075476_1014734123300006867AqueousVTDYAAVLTANYPDDLWNLDGDTYDGLTWLSDTPKPSQAELDDAWPTVQQARQDAVAAKEAARASG
Ga0070750_1048931413300006916AqueousMTDYAAVIRANYPDAEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQQAQADAVAAREAAKQS
Ga0070746_1021335013300006919AqueousMIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTVQYNDEVAAVEEA
Ga0070746_1035709113300006919AqueousMTDYTAVLLATHPGAQWSLSGNDYDTLIWHDNTPKPTQAELDAAWPAVQQARQDAVAAKQAARQSAI
Ga0070746_1054557023300006919AqueousMTDYAAVLTANYPDALWTLDGDNYDGLTWLSDTPKPTQAELDAAWPAVQQARQDAVAAKE
Ga0075460_1010087613300007234AqueousVIDYAAVLSENYPNALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQS
Ga0070745_120957323300007344AqueousMTDYAAVLTANYPDAEWSLAGDSYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVATKEAA
Ga0070752_106859913300007345AqueousVTDYAAVLTANYPGSEWTLDGDTYDGLTWLGDTPKPTQAELDAAWPAVQQAKA
Ga0070753_1004817103300007346AqueousMIDYAAVLAANYPDAEWTLDGDSYDGLTWLSDSPKPSQAELDAAWPAVQ
Ga0070753_119186223300007346AqueousVTDYPAVLIKLYPDCQWSLRGDIYDGLTWLSDTPKPTQQALDDAWPAVQQ
Ga0070753_121987423300007346AqueousMTDYAAVLAANYAGTKWTMDGDHYDGLNWLDDTPKPSQAELDDAWPQVQYEQ
Ga0070753_136268823300007346AqueousMIDYAAVLTELYSSSCWSLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQQQADAVAAKE
Ga0099851_124968133300007538AqueousMTDYAAVLSKNYPAAMWKLDGDAYDGLTWLSDSPKPSQAELDAAWPAVQQARQDAVAAKQAARQS
Ga0099849_120864623300007539AqueousVIDYAAVLTANYSDDEWTLTGNDYDTLEWRSDTPKPTQAELDAAWPAVQQAQTDAVAAKE
Ga0099849_127316923300007539AqueousMIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTV
Ga0070751_129098933300007640AqueousMTDYAAVLTANYPGSEWTLDGDTYDGLTWFSDTPKPTQQELDDAWPAVQQARQDAVAAEAAA
Ga0099850_113903823300007960AqueousVTDYLAVLIANYSDVGWTLNGDTYDGLTWLSDTPKPLQAELDAAWPAVQQAAQDVVAAKEAAR
Ga0099850_126168123300007960AqueousMTDYAAVLVANYPDAEWTLNGDTYDGLTWLSDSPKPTQQELDDAWPAV
Ga0099850_126417323300007960AqueousVTDYAAVLTANYPGAQWTLRGDNYDGLTWLSDTPKPTQQELDAAWPAVQQARQDAIAAEAAAK
Ga0075480_1045542433300008012AqueousMIDYAAVLVANYPGSEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQQ
Ga0105097_1058267923300009169Freshwater SedimentMSTNYPAVLIANYPSAQWTLEGDTYDGLTWLSDTPKPTQAELDAAWPQVQYANQC
Ga0136656_126973313300010318Freshwater To Marine Saline GradientMTDYAAVLAANYPDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAIAAEAAAKQSA
Ga0136549_1023190613300010389Marine Methane Seep SedimentVTDYAAVLTANYPDAEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPNVDYNNQVAAVE
Ga0136549_1025011623300010389Marine Methane Seep SedimentMTDYAAVLTANYPDASWTLNGDTYDGLTWLSDTPKPTEAELDAQWPQVNYDNQVAAVENA
Ga0182074_146521133300016735Salt MarshAVIRANHPGSEYVLVGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAG
Ga0182082_120326223300016771Salt MarshMTDYSAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARIDAQVAKQ
Ga0181584_1085207223300017949Salt MarshMIDYAAVLTANYAGAQWSLTDNDYDTLDWLSDSPKPTQAELDAAWPAVQQQQADAVTAKEAARQS
Ga0181577_1006550813300017951Salt MarshMTDYAAVLAANYSGAQWTLSGNDYDSLVMHDDTPKPTQAELDAAWPAVQQAKADAEAAEAASKQSAIDKL
Ga0181583_1035956113300017952Salt MarshMTDYSAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPAVQQARIDAQ
Ga0181583_1057930923300017952Salt MarshVIDYTAILTANYEGSAWSLNGDTYDGLTWLSDTPKPTQQELDDAWPAVQQA
Ga0181582_1056829113300017958Salt MarshVTDYAAVLTVNYADSLWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARIDAQVAKQATKQSA
Ga0181581_1063993213300017962Salt MarshMTDYAAVLSSNYPDAEWTLNGDTYDGLTWLSDAPKPSQAELDAAWPTVQYEQQ
Ga0181589_1024053313300017964Salt MarshMTDYPAVLTANYPDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAIAAE
Ga0181589_1060071623300017964Salt MarshVTDYAAVLTANYPDDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDA
Ga0181590_1041697613300017967Salt MarshMTDYAAVLSSNYVGFEWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQYQQQRAAIEAQ
Ga0181587_1053159313300017968Salt MarshVIDYTAILTANYEGSAWSLNGDTYDGLTWLSDSPKPSQEELDAAWPQVQYQQQ
Ga0181587_1081350723300017968Salt MarshMTDYAAVLSSNYVGFEWTLNGDTYDGLTWLSDSPKPTQQELDDAWPAVQYQ
Ga0181587_1092856523300017968Salt MarshMIDYAAVLTANYEGSAWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVQYEQQRAE
Ga0181576_1079523013300017985Salt MarshMTDYAAVLTANHPDAEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQQARADAQAAKEATK
Ga0180431_1039352513300017987Hypersaline Lake SedimentMTNYAAVLIANYPGAERTLDGDTYDGLTWLSDSPKPSQAELDAAWPQVQY
Ga0181579_1042153413300018039Salt MarshMTDYAAVLSSNYPDAEWTLNGDTYDGLTWLSDAPKPSQAELDAAWPTVQ
Ga0180433_1053458713300018080Hypersaline Lake SedimentMTDYAAVLGALYAGSEWTLAGDSYDGLMWLSDGPKPSQGELDAAWPAIKAARDLEAVQ
Ga0181592_1049805313300018421Salt MarshMIDYAAVLTANYEGSAWSLNGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARIDAQVAKQATKQ
Ga0181593_1031695613300018423Salt MarshMTNYPAVLTVNYPDAEWTLDGDTYDGLTWLSDTPKPTQAELDAAWPTVQQAEADAVAAKQAARQSA
Ga0181591_1046289223300018424Salt MarshVTDYATVLVANYPDAEWTLNGDTYNGLTWLSDTPKPTQQELDAAWPAVRQARQDAEAAKV
Ga0181591_1049730523300018424Salt MarshVTDYAVVLTANYPNDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDA
Ga0181591_1065001623300018424Salt MarshMSVNYKEVLVANYAGAEWTLRANDYDTLVWLSDTPKPTQQELDDAWPDVQQARIDAQVAKQATKQS
Ga0181591_1074745123300018424Salt MarshVTDYAVVLTANYPDAEWTLDGDTYDGLTWLSDTPKPSQAELDDAWPAVQQAQQDAVAAEAAAK
Ga0181591_1103947023300018424Salt MarshMIDYAAVLTANYPDALWQLDGDTYNGLTWLSDTPKPTQQELDAAWPAVRQARQDAEAAKV
Ga0181594_1025024323300020054Salt MarshMTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQQA
Ga0181594_1026623813300020054Salt MarshMTDYTAVLTANYPDAKWTLDGDTYAGLTWLSDSPKPTQAELDAAWPAVQ
Ga0181594_1027056313300020054Salt MarshMIDYAAVLTANYAGAQWSLTDNDYDTLDWLSDSPKPTQAELDVAWPAVQQQQADAIAAK
Ga0181575_1050901113300020055Salt MarshMTDYAAVLSENYPDAEWVLDGDTYDGLTWQSDTPKPTQAELDAAWPAVQQARQDAEAA
Ga0181588_1025847213300020168Salt MarshVIDYTAILTANYEGSTWSLNGDTYDGLTWLSDTPKPTQQELDAAWPAV
Ga0222715_1049593123300021960Estuarine WaterVTDYPAVLIKLYPDCQWSLRGDTYDGLSWLSDTPKPSQAELDAAWPQVQYEQQ
Ga0222714_1019959633300021961Estuarine WaterMTDYAAVLTANYLGSEWTLNGDTYDGLTWLSDTPKPTQQELDDARPAVQ
Ga0222714_1036664313300021961Estuarine WaterMSHIAAVLSANYRDALWTLDGDTYDGLTWQSPDIAQPTEAEIDAQWPAVQHAQQVADVE
Ga0222714_1063935913300021961Estuarine WaterMIDYAAVLSENYVGSEWTLNGDTYDGLTWLSDTSKPTQAELDAAWPAVQQ
Ga0222719_1013569913300021964Estuarine WaterMTDYAAVLTANYPDAQWTLNGDAYDGLTWLSDTPKPSQAELDAAWPAVQQARADA
Ga0222719_1025842713300021964Estuarine WaterMTDYPVVLATNYAGAQWSLTGNDYDTLRWYDDTPKPTQAELDAAWPAVQQAAQDAVAAQQAARQSAV
Ga0222719_1071361413300021964Estuarine WaterMTDYAAVLTANYPDAEWTLNGDTYEGLTWLSDTPKPSQQELDAAWPAVQQAQADAKEAKQAA
Ga0212025_109431313300022057AqueousMTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVDYDNQVAAVETA
Ga0212021_112172613300022068AqueousMTDYAAVLSANYSDAEWTLNGDTYDGLTWLSDTPKPTQQELDAAWPAVQQQQ
Ga0212028_100646733300022071AqueousVTDYTAVLTANYPDAEWTLNGDSYDGLTWLSDTPKPTQAELDAAWPQVDYDRKYAAV
Ga0196899_109957913300022187AqueousMTDYAVVLSENYPDAEWTLNGDTYAGLTWLSDSPKPTQQELDAAWPAVQ
Ga0196905_106949633300022198AqueousMTDYAAVLTANYPNAQWTLNGDTYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAA
Ga0196905_110172013300022198AqueousMIDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPQVQYEQQRAEIE
Ga0196905_111016923300022198AqueousMTDYTAVLTANYAGAQWSLNGNDYDSLVMHDDTPKPSQQELDAAWPAVQQARQDAIAAEAAAK
Ga0196905_120021923300022198AqueousMIDYVAVLSENYPGSEWTLDGDTYDGLTWLSDTPKPSQAELDAAWPAVQ
Ga0255764_1040316513300023081Salt MarshMTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAV
Ga0255760_1016552733300023115Salt MarshMTDYAAILTANYQGSSWTLNGDTYDGLTWLSDSPKPTQAELDAAWPAVQQAQADAV
Ga0255751_1031003223300023116Salt MarshVTDYAVVLTANYPNDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDAQVAKQ
Ga0255776_1039939713300023173Salt MarshVTDYAAVLTANYPDDYWTLDGETYDGLTWLSDTPKPSQAELDAAWPAVQQARIDAQIAK
Ga0255768_1032024423300023180Salt MarshMTDYPAVLTANYPGSEWTLTGTSYDGLTWLSDTPKPTQAELDAAWPAVQQAQADAVAAKEAARL
Ga0255768_1064227923300023180Salt MarshMTDYAAVLTANYPDAEWTLNGDAYDGLTWLSDTPKPSQAELDAAWPAVQQAQQDAVTAKETARQSAI
Ga0208898_112867923300025671AqueousMTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQSGLD
Ga0208162_109776413300025674AqueousVTNYAAVLTANYPTAQWSLSGNDYDTLVMHDDTPKPSQAELDAAWPAVQQAQADVVTAKEAAR
Ga0208162_113808323300025674AqueousVIDYAAVLTANYSDDEWTLTGNDYDTLEWRSDTPKPTQAELDAAWPAVQQAQTDAVAAK
Ga0208162_116659723300025674AqueousMTDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPTQAELDAAWPQVQYEQQRAEIETQRRN
Ga0208899_114503623300025759AqueousMTDYAAVLSANYSDAEWTLNGDTYDGLTWLSDTPKPTQQELDAAWPAVQQAQTDAVAAKETARQSAI
Ga0208767_118006523300025769AqueousMIDYTAVLTANYPGAQWTLNGDTYDGLTWLSDSPKPTQAELDAAWPTVQYN
Ga0208425_104235313300025803AqueousVTDYAAVLTANYPDAQWKLDGDNYDGLTWLSDTPKPTQAELDAAWPQVNYDQQVAE
Ga0208542_115279523300025818AqueousVIDYAAVLSENYPNALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAKVAARQSGLDK
Ga0208645_103202843300025853AqueousVTDYAAVLKANYADAEWTLDGDNYDGLTWLSDTPKPTQAELDAAWPQVDYAN
Ga0208644_114957513300025889AqueousMTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQD
Ga0348335_054698_3_1553300034374AqueousMTDYVAVLKTKYPGAQWSLNGDTYDGLTWLSDTPKPSQAELDAAWPQVDYD
Ga0348335_134616_529_7053300034374AqueousMTDYAAVLTANYPDALWQLEGDTYNGLTWLSDTPKPTQAELDAAWPAVQQARQDAEAAK
Ga0348336_118254_681_8543300034375AqueousMTDYAAVLTANYPGSEWTLDGDTYDGLTWLGDTPKPTQAELDAAWPAVQQAKADAVAA
Ga0348336_123265_662_8233300034375AqueousMTDYAAVLSSNYVGSEWTLNGDTYDGLTWLSDTPKPSQQELDAAWPAVQQAQAD
Ga0348336_201254_339_5303300034375AqueousVTDYSAVLTANYSDAEWTLDGDTYDGLTWLSDTPKPTQQELDDAWPAVQQARQDAEAAKVAARQ


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