NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F106046

Metagenome / Metatranscriptome Family F106046

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106046
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence VNDNVRYWIATAPVGAASVLAEELAQFGASDIRERSHDVKFQ
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 29.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 95.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.000 % of family members)
Environment Ontology (ENVO) Unclassified
(24.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 12.86%    β-sheet: 0.00%    Coil/Unstructured: 87.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01541GIY-YIG 10.00
PF06181Urate_ox_N 10.00
PF00929RNase_T 7.00
PF00795CN_hydrolase 2.00
PF00892EamA 1.00
PF00753Lactamase_B 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3748Uncharacterized membrane proteinFunction unknown [S] 10.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.00 %
UnclassifiedrootN/A27.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10369244All Organisms → cellular organisms → Bacteria → Proteobacteria874Open in IMG/M
3300001593|JGI12635J15846_10848413All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria522Open in IMG/M
3300001661|JGI12053J15887_10276718All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium827Open in IMG/M
3300003505|JGIcombinedJ51221_10181829All Organisms → cellular organisms → Bacteria → Proteobacteria852Open in IMG/M
3300004092|Ga0062389_104284564All Organisms → cellular organisms → Bacteria → Proteobacteria537Open in IMG/M
3300004152|Ga0062386_100181471All Organisms → cellular organisms → Bacteria → Proteobacteria1651Open in IMG/M
3300004635|Ga0062388_100685460All Organisms → cellular organisms → Bacteria → Proteobacteria954Open in IMG/M
3300005541|Ga0070733_10715588All Organisms → cellular organisms → Bacteria → Proteobacteria672Open in IMG/M
3300005950|Ga0066787_10036171All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium909Open in IMG/M
3300005994|Ga0066789_10237146All Organisms → cellular organisms → Bacteria → Proteobacteria766Open in IMG/M
3300005995|Ga0066790_10419514All Organisms → cellular organisms → Bacteria → Proteobacteria572Open in IMG/M
3300006052|Ga0075029_100975168All Organisms → cellular organisms → Bacteria → Proteobacteria584Open in IMG/M
3300009634|Ga0116124_1099593All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300009660|Ga0105854_1153266Not Available745Open in IMG/M
3300009697|Ga0116231_10159661All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1309Open in IMG/M
3300009701|Ga0116228_10495676Not Available836Open in IMG/M
3300009701|Ga0116228_10861048All Organisms → cellular organisms → Bacteria → Proteobacteria606Open in IMG/M
3300009709|Ga0116227_10178293All Organisms → cellular organisms → Bacteria → Proteobacteria1661Open in IMG/M
3300009709|Ga0116227_10962772All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-14642Open in IMG/M
3300010159|Ga0099796_10196801Not Available816Open in IMG/M
3300010386|Ga0136806_1192468All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300011106|Ga0151489_1460689All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-14540Open in IMG/M
3300011269|Ga0137392_10569330All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium941Open in IMG/M
3300012203|Ga0137399_10455970All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1070Open in IMG/M
3300012359|Ga0137385_11025548Not Available680Open in IMG/M
3300012924|Ga0137413_10293104All Organisms → cellular organisms → Bacteria → Proteobacteria1134Open in IMG/M
3300014168|Ga0181534_10890059All Organisms → cellular organisms → Bacteria → Proteobacteria532Open in IMG/M
3300014493|Ga0182016_10585928All Organisms → cellular organisms → Bacteria → Proteobacteria636Open in IMG/M
3300014498|Ga0182019_11406747All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Halofilum → Halofilum ochraceum517Open in IMG/M
3300014657|Ga0181522_10761621Not Available593Open in IMG/M
3300014658|Ga0181519_11068826Not Available502Open in IMG/M
3300015242|Ga0137412_10557747All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales871Open in IMG/M
3300017946|Ga0187879_10119554All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1503Open in IMG/M
3300020199|Ga0179592_10039213All Organisms → cellular organisms → Bacteria → Proteobacteria2146Open in IMG/M
3300020199|Ga0179592_10232416All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium831Open in IMG/M
3300020579|Ga0210407_11182310All Organisms → cellular organisms → Bacteria → Proteobacteria576Open in IMG/M
3300020580|Ga0210403_10197530All Organisms → cellular organisms → Bacteria → Proteobacteria1650Open in IMG/M
3300020581|Ga0210399_10544581All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300020583|Ga0210401_11351178Not Available570Open in IMG/M
3300021168|Ga0210406_10708596Not Available775Open in IMG/M
3300021168|Ga0210406_10933713All Organisms → cellular organisms → Bacteria → Proteobacteria650Open in IMG/M
3300021170|Ga0210400_10674235All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium851Open in IMG/M
3300021180|Ga0210396_10854204All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-14778Open in IMG/M
3300021181|Ga0210388_10000627All Organisms → cellular organisms → Bacteria → Proteobacteria28262Open in IMG/M
3300021181|Ga0210388_10759929Not Available842Open in IMG/M
3300021404|Ga0210389_10701794All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300021405|Ga0210387_10171640All Organisms → cellular organisms → Bacteria → Proteobacteria1868Open in IMG/M
3300021407|Ga0210383_10274712All Organisms → cellular organisms → Bacteria → Proteobacteria1447Open in IMG/M
3300021474|Ga0210390_10397919Not Available1164Open in IMG/M
3300021477|Ga0210398_10514354All Organisms → cellular organisms → Bacteria → Proteobacteria974Open in IMG/M
3300021479|Ga0210410_10526106Not Available1055Open in IMG/M
3300024176|Ga0224565_1047702All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-14503Open in IMG/M
3300024187|Ga0247672_1090424Not Available532Open in IMG/M
3300024283|Ga0247670_1066663All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria654Open in IMG/M
3300024288|Ga0179589_10037673All Organisms → cellular organisms → Bacteria → Proteobacteria1747Open in IMG/M
3300026291|Ga0209890_10139670All Organisms → cellular organisms → Bacteria → Proteobacteria812Open in IMG/M
3300026294|Ga0209839_10240311Not Available571Open in IMG/M
3300026304|Ga0209240_1093943All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1085Open in IMG/M
3300026557|Ga0179587_10063926All Organisms → cellular organisms → Bacteria → Proteobacteria2151Open in IMG/M
3300026557|Ga0179587_10946227All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300027496|Ga0208987_1075662All Organisms → cellular organisms → Bacteria → Proteobacteria612Open in IMG/M
3300027660|Ga0209736_1070225Not Available973Open in IMG/M
3300027663|Ga0208990_1190957Not Available524Open in IMG/M
3300027696|Ga0208696_1210980All Organisms → cellular organisms → Bacteria → Proteobacteria613Open in IMG/M
3300027737|Ga0209038_10250606Not Available531Open in IMG/M
3300027807|Ga0209208_10508061All Organisms → cellular organisms → Bacteria → Proteobacteria561Open in IMG/M
3300027824|Ga0209040_10529189All Organisms → cellular organisms → Bacteria → Proteobacteria517Open in IMG/M
3300027860|Ga0209611_10214214Not Available1170Open in IMG/M
3300027860|Ga0209611_10575385All Organisms → cellular organisms → Bacteria → Proteobacteria624Open in IMG/M
3300027879|Ga0209169_10756042All Organisms → cellular organisms → Bacteria → Proteobacteria502Open in IMG/M
3300027884|Ga0209275_10040923All Organisms → cellular organisms → Bacteria → Proteobacteria2185Open in IMG/M
3300027911|Ga0209698_11128067Not Available580Open in IMG/M
3300028562|Ga0302151_10286943All Organisms → cellular organisms → Bacteria → Proteobacteria547Open in IMG/M
3300028783|Ga0302279_10242498All Organisms → cellular organisms → Bacteria → Proteobacteria822Open in IMG/M
3300028808|Ga0302228_10099661All Organisms → cellular organisms → Bacteria → Proteobacteria1361Open in IMG/M
3300028813|Ga0302157_10290457Not Available898Open in IMG/M
3300028813|Ga0302157_10406038Not Available725Open in IMG/M
3300029922|Ga0311363_11100356All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria683Open in IMG/M
3300029953|Ga0311343_10442790Not Available1178Open in IMG/M
3300029999|Ga0311339_10487630All Organisms → cellular organisms → Bacteria → Proteobacteria1258Open in IMG/M
3300029999|Ga0311339_11147771All Organisms → cellular organisms → Bacteria → Proteobacteria715Open in IMG/M
3300030046|Ga0302305_1173369All Organisms → cellular organisms → Bacteria → Proteobacteria799Open in IMG/M
3300030399|Ga0311353_11473796All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-14552Open in IMG/M
3300030519|Ga0302193_10187500Not Available1168Open in IMG/M
3300030520|Ga0311372_11508749All Organisms → cellular organisms → Bacteria → Proteobacteria828Open in IMG/M
3300030813|Ga0265750_1050122All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300031057|Ga0170834_109514828Not Available558Open in IMG/M
3300031231|Ga0170824_111353977All Organisms → cellular organisms → Bacteria → Proteobacteria830Open in IMG/M
3300031236|Ga0302324_101892885All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium754Open in IMG/M
3300031236|Ga0302324_103438850All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria515Open in IMG/M
3300031258|Ga0302318_10540469Not Available590Open in IMG/M
3300031524|Ga0302320_11984317All Organisms → cellular organisms → Bacteria → Proteobacteria546Open in IMG/M
3300031708|Ga0310686_107488442All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1447Open in IMG/M
3300031715|Ga0307476_10436123All Organisms → cellular organisms → Bacteria → Proteobacteria969Open in IMG/M
3300031718|Ga0307474_11502248All Organisms → cellular organisms → Bacteria → Proteobacteria530Open in IMG/M
3300031753|Ga0307477_11000474Not Available549Open in IMG/M
3300031823|Ga0307478_10626938Not Available900Open in IMG/M
3300031837|Ga0302315_10176771Not Available1303Open in IMG/M
3300031962|Ga0307479_10176260All Organisms → cellular organisms → Bacteria → Proteobacteria2102Open in IMG/M
3300032160|Ga0311301_11855767All Organisms → cellular organisms → Bacteria → Proteobacteria714Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.00%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog8.00%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated8.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil5.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.00%
SedimentEnvironmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil1.00%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.00%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005950Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300009634Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150EnvironmentalOpen in IMG/M
3300009660Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058EnvironmentalOpen in IMG/M
3300009697Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010386Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63EnvironmentalOpen in IMG/M
3300011106Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300024176Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1EnvironmentalOpen in IMG/M
3300024187Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027496Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027807Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027860Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028562Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3EnvironmentalOpen in IMG/M
3300028783Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030046Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030813Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031258Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1036924413300001593Forest SoilVNDNVRYWIATAPVGAASVLAEELVQFGAHDVRER
JGI12635J15846_1084841313300001593Forest SoilLSANDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQ
JGI12053J15887_1027671823300001661Forest SoilVNGNVRYWIATAPVGAASVLAEELALFGAHDVRERSHDVKF
JGIcombinedJ51221_1018182913300003505Forest SoilVSEDVRYWIATAPIGAASVLAEELERFGASDIRERSHDVKFQ
Ga0062389_10428456413300004092Bog Forest SoilMSPERDDNVRYWIATAPVGAASVLAEELAQLGASDIRERSHDVRF
Ga0062386_10018147123300004152Bog Forest SoilVTGNVRYWIATAPIGAASVLAEELAQIGATDIRERSHDVKF
Ga0062388_10068546023300004635Bog Forest SoilVSEDVRYWIATAPIGAASVLAEELQQFGASDIRERSHDVK
Ga0070733_1071558823300005541Surface SoilMNDNVRYWVATAPVGAASVLAEELVHFGAEQIRERSHDVKFQGTLEV
Ga0066787_1003617123300005950SoilVSDNVRYWIATAPVGAASVLAEELRQFGAEDIRERSHDVK
Ga0066789_1023714623300005994SoilVNDNVRYWIATAPVGAASVLAEELAQFGAHDIRERSHDVKFQGTLEVGYRA
Ga0066790_1041951423300005995SoilVSDNVRYWIATAPVGAASVLAEELAQFGATDIRERSHDVKFQGT
Ga0075029_10097516823300006052WatershedsVTDNVLYWIATAPVGAASVLAEELAGLGASDLRERSNDVKFQ
Ga0116124_109959323300009634PeatlandVSDNVRYWIATAPIGAASVLAEELLQYGASGIRERSNDVKF*
Ga0105854_115326623300009660Permafrost SoilVNDNVRYWIATAPVGAASVLAEELKQFGAEDIRERSHDVKFQGTLEVGYRT
Ga0116231_1015966123300009697Host-AssociatedLGGIPLPVSDDIRYWVATAPVGAASVLTAELLEFGASDVRERSIDVKFQGSL
Ga0116228_1049567613300009701Host-AssociatedLSANIQYWIATAPVGAASVLAQELAAFGASEVRER
Ga0116228_1086104823300009701Host-AssociatedLSDIPNVRYWIATAPVGAASVLAEELAQFGATDIRERSHDVKFQGTLETG
Ga0116227_1017829313300009709Host-AssociatedMTDNVRYWIATAPVGAASVLAGELAQFGATDIRERSHDVKFQGTLE
Ga0116227_1096277223300009709Host-AssociatedMDNVRYWIATAPIGAASVLAEELVSFGATDIRERSHDVKFQGT
Ga0099796_1019680113300010159Vadose Zone SoilVSDNVRYWIATAPVGAASVLAEELAAFGASDIRERSHDVKFQGTLDVG
Ga0136806_119246823300010386SedimentVSAERRSWIATAPIGAASVLAEELAPFGASAVRERSSDXXXXXXX
Ga0151489_146068923300011106SoilVNDNVRYWIATAPVGAASVLAEELAQFGAADIRERSHD
Ga0137392_1056933013300011269Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAHDVRERSHDVK
Ga0137399_1045597023300012203Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAHDIRERSHDVKFQ
Ga0137385_1102554823300012359Vadose Zone SoilLHVNDNVRYWIATAPVGAASVLAEELAQFGAQDVRERSHDVKFQGTL
Ga0137413_1029310413300012924Vadose Zone SoilVSDNILYWIATAPVGAASVLTEELAQFGASDIRERSHDVKFQGTLEVGYRA
Ga0181534_1089005913300014168BogMNGNVRYWIATAPVGAASVLAEELAQFGAQDIRERSH
Ga0182016_1058592813300014493BogMNDNVLYWIATAPVGAASVLAEELVQFGATDIRERSHD
Ga0182019_1140674713300014498FenMNDNVRYWIATAPVGAAAVLAEELAGFGASDIRERSHDVKFQGTLEVG
Ga0181522_1076162113300014657BogLSGDQHNVRYWIATAPVGAASVLAEELADYGAGDIRERSHDVKFQGTLEV
Ga0181519_1106882623300014658BogLSENVLYWIATAPVGAASVLAQELEVFGAAHIRERSHDVKFQGT
Ga0137412_1055774733300015242Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGASDIRERSHDVKFQ
Ga0187879_1011955413300017946PeatlandVNESVRYWNATAPVGAASVLTEELREFGAVEIKERSHDVKFQGTLEV
Ga0179592_1003921333300020199Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDIRERSHDVKFQGTLEVGYR
Ga0179592_1023241623300020199Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDVRERS
Ga0210407_1118231023300020579SoilMTENVRYWIATAPVGAASVLAEELALLGGSDIRERSHDVK
Ga0210403_1019753013300020580SoilLSDPENVRYWIATAPVGAASVMAEELVQFGADDIR
Ga0210399_1054458113300020581SoilVNGNVRYWIATAPVGAASVLAEELAQFGANDIRERSHDVKFQGTLEVGYRA
Ga0210401_1135117823300020583SoilLHVNDNVRYWIATAPVGAASVLAEELTQFGAHDVRERSHDVK
Ga0210406_1070859623300021168SoilVSDNVRYWIATAPVGAASVLTEELAAFGASDIRERSHDVKF
Ga0210406_1093371313300021168SoilMNDNVRYWVATAPVGAASVLAEELAQFGAEDIRERS
Ga0210400_1067423523300021170SoilLHVNDNVRYWIATAPVGAASVLAEELTQFGAHDVRERSHDVKFQ
Ga0210396_1085420413300021180SoilLSAKDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGTLEVGYR
Ga0210388_1000062713300021181SoilLSVNDNVRYWVATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGT
Ga0210388_1075992923300021181SoilLSVNDNVRYWVATAPVGAASVLAEELAQFGAEDIR
Ga0210389_1070179413300021404SoilMNDNVRYWVATAPVGAASVLAEELAQFGAEDIRERSHD
Ga0210387_1017164033300021405SoilLSVNDNVRYWVATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGTLEV
Ga0210383_1027471223300021407SoilLSDPDNVRYWIATAPVGAASVLAEELLQFGAGDIRERS
Ga0210390_1039791923300021474SoilVNDNVRYWIATAPVGAAAVLAEELAQFGAHDIRERSHDVKFQGTLEVGY
Ga0210398_1051435413300021477SoilLSANDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQG
Ga0210410_1052610613300021479SoilVNDNVRYWIATAPVGAASVLAEELTQFGAQDVRERSHDVK
Ga0224565_104770223300024176Plant LitterVNENVRYWFATAPVGAASVLAEELAQFGAVEIRDRSHDVRF
Ga0247672_109042413300024187SoilVNDNVRYWIATAPVGAASVLAEELAQFGAADIRERSHDVKFQGTLEVGYRT
Ga0247670_106666323300024283SoilMNDNVRYWIATAPVGAASVLAEELAAFGASDIRERSHDVKFQGTLEV
Ga0179589_1003767313300024288Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDVRERSH
Ga0209890_1013967023300026291SoilMNDNVRYWIATAPVGAAAVLAEELAQFGASDIRERSHDVKFQGTLEVGYRTC
Ga0209839_1024031113300026294SoilLSNRQDNVRYWIATAPVGAASVLAEELAQFGATDIRERSHDVKFQGT
Ga0209240_109394323300026304Grasslands SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDVRERSHDVKFQGTLE
Ga0179587_1006392613300026557Vadose Zone SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDIRERSHDVKFQGTLEVGYRT
Ga0179587_1094622713300026557Vadose Zone SoilVSDNVRYWIATAPVGAASVLAEELAQFGAHDIRERSHDVKFQGTLEVGYRT
Ga0208987_107566223300027496Forest SoilLSVNDNVRYWVATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGTL
Ga0209736_107022523300027660Forest SoilVNDNVRYWIATAPVGAASVLAEELAQFGAQDIRERSH
Ga0208990_119095713300027663Forest SoilMAVPFNDNVRYWIATAPVGAASVLAEELAQFGADDVRERSHDVKFQGTL
Ga0208696_121098023300027696Peatlands SoilLTLVTDNVRYWIATAPVGAASVLAEELVQYGAGDIRERSH
Ga0209038_1025060613300027737Bog Forest SoilLSDPDNVRYWIATAPVGAASVLAEELVQFGAADIRERSHDVR
Ga0209208_1050806113300027807Host-AssociatedVSDDIRYWVATAPVGAASVLAAELLEFGASDVRER
Ga0209040_1052918923300027824Bog Forest SoilLLDHGNVRYWIATAPIGAVSVLAQELAQYGAADIRERSHDVK
Ga0209611_1021421423300027860Host-AssociatedMRSNVRYWIATAPKGAAAVLAEELAQFGASDIRERSHDVKFQGTL
Ga0209611_1057538523300027860Host-AssociatedVATAPVGAASVLAEELAGLGATDIRERSSDVKFQGDL
Ga0209169_1075604213300027879SoilMSPERDDNVRYWIATAPVGAASVLAEELAQLGASDIR
Ga0209275_1004092313300027884SoilVNDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGTLEVGY
Ga0209698_1112806713300027911WatershedsMTDNVCYWIATAPVGAASVLAEELAQFGASDIRER
Ga0302151_1028694323300028562BogVTDNVLYWIATAPVGAASVLAEELAAFGATDLRERSNDVKFQWTLE
Ga0302279_1024249823300028783BogVNDSVRYWIATAPVGASSVLAEELAAFGAADIRERSHDVKFQGT
Ga0302228_1009966113300028808PalsaMPDNVRYWIATAPVGAASVLAEELAQFGAQDIKERSHDVKFQGTL
Ga0302157_1029045713300028813BogMSGNVRYWIATAPVGAASVLAGELAQFGATDVRER
Ga0302157_1040603823300028813BogMNGNVRYWIATAPVGAASVLAEELAQFGASDIRERSHDVK
Ga0311363_1110035623300029922FenMGDNVLYWIATAPVGAASVLAEELAQFGAADIRERSHDVKFQGTLEVGYRA
Ga0311343_1044279023300029953BogVSEDVRYWFATAPVGAASVLAEELAEFGAGNIRARSHDVKFQ
Ga0311339_1048763023300029999PalsaVSEDVRYWIATAPIGAASVLAEELKQFGASDIRGR
Ga0311339_1114777123300029999PalsaMNDNVLYWIATAPVGAASVLAQELAQFGAEDIRERSHDVKFQGNLEVG
Ga0302305_117336913300030046PalsaVSEDVRYWIATAPIGAASVLAEELEQFGASDIRER
Ga0311353_1147379623300030399PalsaMNDNVLYWIATAPVGAASVLAQELAQFGAEDIRERSHD
Ga0302193_1018750013300030519BogVSEDVRYWFATAPVGAASVLAEELAEFGAGNIRARSHDVKF
Ga0311372_1150874913300030520PalsaLSDPENVRYWIATAPVGAASVLAEELAQFGAVEIRERSHDVKFQ
Ga0265750_105012233300030813SoilMNDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGA
Ga0170834_10951482813300031057Forest SoilLNVNDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKFQGTLEVGYR
Ga0170824_11135397723300031231Forest SoilVNDNVRYWIATAPVGAASVLAEELAQFGAADIRERSHDVKF
Ga0302324_10189288523300031236PalsaMCVSDNVLYWVATAPVGASSVLSEELAQFGAGDIRE
Ga0302324_10343885013300031236PalsaVNDNVRYWIATAPVGAASVLAEELKQFGAEDIRERSHDVKFQG
Ga0302318_1054046923300031258BogVSEDVRYWFATAPVGAASVLAEELAEFGAGNIRARSHDVKFQGT
Ga0302320_1198431723300031524BogVNDSVRYWIATAPVGASSVLAEELAAFGAADIRER
Ga0310686_10748844213300031708SoilLNDNVRYWIATAPVGAASVLAEELAQFGATDIRERSHDVKFQGTLEVG
Ga0307476_1043612323300031715Hardwood Forest SoilLSVNDNVRYWIATAPVGAASVLAEELAQFGAEDIRERSHDVKF
Ga0307474_1150224823300031718Hardwood Forest SoilVNDNVRYWIATAPVGAAAVLAEELAQFGAHDIRERSHDVKFQG
Ga0307477_1100047423300031753Hardwood Forest SoilVNDNVRYWIATAPVGAASVLAEELAQFGAHDVRER
Ga0307478_1062693813300031823Hardwood Forest SoilVSEDVRYWIATAPIGAASVLAEELEQFGASDIRERSHDVKFQGTLEV
Ga0302315_1017677123300031837PalsaMNDNVLYWIATAPVGAASVLAEELVQFGATDIRERSHDVKFQGTLE
Ga0307479_1017626033300031962Hardwood Forest SoilVNDNVRYWIATAPVGAAAVLAEELAQFGAEDIRERSHDVKFQGTLEVG
Ga0311301_1185576723300032160Peatlands SoilLTLVNDNVRYWIATAPVGAASVLAEELAQYGAGDIRERSHDVKFQGTLEVGYR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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