NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105978

Metagenome Family F105978

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105978
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 47 residues
Representative Sequence MKRTILLLFALAASPASVLCGDRHIAFERDQAVWIANLDGTGEKKIA
Number of Associated Samples 90
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 94.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(37.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1A5_c1_00130450
2KansclcFeb2_14458880
3AF_2010_repII_A001DRAFT_100348392
4Ga0062593_1024206541
5Ga0062592_1020393481
6Ga0066673_109049301
7Ga0066685_109894921
8Ga0065705_100510931
9Ga0065707_108799211
10Ga0070660_1001583553
11Ga0070689_1017575821
12Ga0070659_1000067831
13Ga0070659_1018520392
14Ga0070667_1023189512
15Ga0070713_1007170321
16Ga0070711_1020580472
17Ga0070705_1017870401
18Ga0066686_101391393
19Ga0066687_101490222
20Ga0066687_107017562
21Ga0070706_1012229672
22Ga0070707_1013414211
23Ga0070699_1009805211
24Ga0070665_1021967011
25Ga0066661_107006942
26Ga0066698_103419971
27Ga0066698_107791862
28Ga0066708_100117701
29Ga0070702_1006513121
30Ga0081540_13529582
31Ga0070717_106914941
32Ga0066651_104378242
33Ga0070715_104901312
34Ga0066710_1007346703
35Ga0126308_101514821
36Ga0126314_112471901
37Ga0126381_1001175004
38Ga0126383_103170653
39Ga0137393_104057661
40Ga0137463_10738031
41Ga0137364_106358192
42Ga0137383_100241135
43Ga0137383_113627651
44Ga0137382_108084391
45Ga0137363_104021452
46Ga0137399_110563862
47Ga0137362_116263412
48Ga0137381_104671841
49Ga0137376_100695041
50Ga0137376_114251071
51Ga0137376_117514982
52Ga0137378_111946451
53Ga0137370_101818261
54Ga0137387_106181261
55Ga0137371_113387201
56Ga0137373_108245021
57Ga0137358_101814101
58Ga0137358_104416492
59Ga0137358_104754882
60Ga0137398_102262141
61Ga0157291_102284402
62Ga0157306_101251722
63Ga0137395_105566271
64Ga0126369_107220711
65Ga0164304_101639691
66Ga0134078_101643521
67Ga0137405_13105502
68Ga0132255_1056344512
69Ga0182041_104318701
70Ga0182032_102878802
71Ga0182032_118617562
72Ga0184624_104546992
73Ga0066655_111592622
74Ga0193704_10319091
75Ga0193692_10599381
76Ga0193735_10519312
77Ga0193757_10048392
78Ga0193721_11644981
79Ga0193745_10298172
80Ga0222623_102484502
81Ga0222622_100613561
82Ga0207692_102352971
83Ga0207685_105257242
84Ga0207699_104015772
85Ga0207707_111051002
86Ga0207663_114887241
87Ga0207662_101061333
88Ga0209161_101594102
89Ga0307293_100559342
90Ga0307299_100769852
91Ga0170823_171899871
92Ga0170824_1035611342
93Ga0170820_130945621
94Ga0170820_148155311
95Ga0170818_1081168342
96Ga0310886_103668581
97Ga0306925_116765722
98Ga0308173_114277652
99Ga0307471_1030142302
100Ga0307472_1021649891
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 20.00%    β-sheet: 21.33%    Coil/Unstructured: 58.67%
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Original

Variant

51015202530354045MKRTILLLFALAASPASVLCGDRHIAFERDQAVWIANLDGTGEKKIASequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Switchgrass Rhizosphere
Soil
Soil
Soil
Grasslands Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
11.0%23.0%3.0%11.0%6.0%4.0%13.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A5_c1_001304502124908044SoilMKRTILLLFALAASPASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAISPPPTVRI
KansclcFeb2_144588802124908045SoilMIRIIALLFAVAACPASVFCGDRHVAFERNDAIYIVNLDGTGEKKIADGI
AF_2010_repII_A001DRAFT_1003483923300000793Forest SoilMKRTILLLCALAAPHVSVFCSDRHIAFERDQAVWIANLDGTGEKKIADGIFPAISPD
Ga0062593_10242065413300004114SoilMKRAILLLFALATSHASVFCGDRQISFERDQAVWLANLDGTGEKKIADGIFPAI
Ga0062592_10203934813300004480SoilMKRMILLLFALAVLPVSVFCSDRQIAFERDQAVWVANFDGTNEKKIADGIFPAISPD
Ga0066673_1090493013300005175SoilMKHLILFGLALIVSPASVFCGDRHIAFERNQAVWIANLDGTGEKKI
Ga0066685_1098949213300005180SoilMRRIIALLFALGVSRASVFCGDRHIAFERNDAIYIANLDGTGEKKIADGIFPAI
Ga0065705_1005109313300005294Switchgrass RhizosphereMKTMLLVFALAASPASVFCGDRHIAFERDQTVWLANLDGTGEKKVADGIFPAISP
Ga0065707_1087992113300005295Switchgrass RhizosphereMKRAILLLFALAASPASVFCGDRHIAFERDQAVWLANLDGTGEKKIADGIFPAI
Ga0070660_10015835533300005339Corn RhizosphereMKRTILLLFALAASAASVFCGDRQIAFERDQAVWIANLDGTTEK
Ga0070689_10175758213300005340Switchgrass RhizosphereMKRTILLLFALAASPASVFCGDRQIAFERDQAVWIANLDGTGEKKIADGIFPAIS
Ga0070659_10000678313300005366Corn RhizosphereMKRTILLLFALAASAASVFCGDRQIAFERDQAVWIANLDGTTEKKIADGIFPAI
Ga0070659_10185203923300005366Corn RhizosphereMKRTILLLFALAASPASVLCGDRHIAFERDQAVWLANLDGTGEKKIADGIFP
Ga0070667_10231895123300005367Switchgrass RhizosphereMRRTILLLFALAAYPASVFCADRYIAFERDQAVWLANLDGTGEKKIADGIFPAI
Ga0070713_10071703213300005436Corn, Switchgrass And Miscanthus RhizosphereMKRTILLFFALAASSASVLCGDRHIAFERDQAVWIANLDGT
Ga0070711_10205804723300005439Corn, Switchgrass And Miscanthus RhizosphereMKRTILLFFALAASSASVLCGDRHIAFERDQAVWIANLDGTGEKK
Ga0070705_10178704013300005440Corn, Switchgrass And Miscanthus RhizosphereMKTIILLGFTLAFSSASGFCADRQIAFERDQAVWIAKLDGTGEKKIADGIF
Ga0066686_1013913933300005446SoilMKKIILLAFVLAASPASVFCGDRHIAFERDQAVWIAKLDGTGEKKIADGIFPAIS
Ga0066687_1014902223300005454SoilMKKIILLAFVLATSPASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAI
Ga0066687_1070175623300005454SoilMKNVILFGLALIVSSASVFCGDRHIAFERNQAVWIANLDGT
Ga0070706_10122296723300005467Corn, Switchgrass And Miscanthus RhizosphereMKRTILLLLALAASSASVFCGDRHIAFERDQAVWIANLDGTGEK
Ga0070707_10134142113300005468Corn, Switchgrass And Miscanthus RhizosphereMKTIILLGFTLAFSSASGFCADRQIAFERDQAVWIAKLDGT
Ga0070699_10098052113300005518Corn, Switchgrass And Miscanthus RhizosphereMKTIILLGFTLAFSSASGFCADRQIAFERDQAVWIAKLDGTGEKKIADGIFP
Ga0070665_10219670113300005548Switchgrass RhizosphereMKRTILLLFALAASPASVFCGDRQIAFERDQAVWIANLDGTGEKKIADGIFPAISPD
Ga0066661_1070069423300005554SoilMRRIIALLFAVAASPASVFCGDRHIAFERNDAIYIANLD
Ga0066698_1034199713300005558SoilMKKIILLGFALAFSPTSGFCGDRQIAFERDQAVWIAKLDGT
Ga0066698_1077918623300005558SoilMKKIILLGFTLAFSSASGFCADRQIAFERDQAVWIAK
Ga0066708_1001177013300005576SoilMRRIIALLFALAASPASVFCGDRHVAFERNDAIYIANLDGTGEKKIADGIFPAISPDG
Ga0070702_10065131213300005615Corn, Switchgrass And Miscanthus RhizosphereMKRTILLLFALAASAASVFCGDRQIAFERDQAVWIANLDG
Ga0081540_135295823300005983Tabebuia Heterophylla RhizosphereMNRILLVLIALAALPASLFCSDRQIAFERDQAVWIANLDGTSEKKIA
Ga0070717_1069149413300006028Corn, Switchgrass And Miscanthus RhizosphereMKRAILLLFVLAAAPASVFCGDRHIAFERDQAVWIAN
Ga0066651_1043782423300006031SoilMRRIIALLFALAASPASVFCGDRHIAFERNDAIYIANLDGTGEKKIADGI
Ga0070715_1049013123300006163Corn, Switchgrass And Miscanthus RhizosphereMKRTILLLFALAASPASVFCGERHIAFERDQAVWLANLDGT
Ga0066710_10073467033300009012Grasslands SoilMKKIILLGFTLAFSSASGFCADRQIAFERDQAVWIAKLDGTGERKIA
Ga0126308_1015148213300010040Serpentine SoilMKRTILLLLALAAAPASAFCGDRHIAFERDLAVWIANLAG
Ga0126314_1124719013300010042Serpentine SoilMKRISLLLVALAVSPSSLFSDNRHLAFERDQAVWIANLD
Ga0126381_10011750043300010376Tropical Forest SoilMKRKILVLFALAASSTSGFCGDRQIAFERDQAVWIAN
Ga0126383_1031706533300010398Tropical Forest SoilMKKIILLGFALALSPASGFCGDRQIAFERDQAVWI
Ga0137393_1040576613300011271Vadose Zone SoilMRRVIALLFALAASPASIFCGDRHVAFERNDAIYIANLDGTGEKKIADGIFPAISPDGT
Ga0137463_107380313300011444SoilMKRMIVLLFALAASSASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAISP
Ga0137364_1063581923300012198Vadose Zone SoilMRRIIALLFAVAASPASVFCGDRHIAFERNDAIYIA
Ga0137383_1002411353300012199Vadose Zone SoilMRRIIALLFALAASPASVFCGDRHVAFERNDAIYIANLD
Ga0137383_1136276513300012199Vadose Zone SoilMKKIIALGLALLVSPASVFCGDRHIAFERNQAVWIANLDGTGEKKIADGIF
Ga0137382_1080843913300012200Vadose Zone SoilMKRTILLLFALAASPAPVFCADRHIAFERDQAVWIANLDGTGEKKIADGIFPAIS
Ga0137363_1040214523300012202Vadose Zone SoilMKRIIVLLFALAASPASVFCGDRHIAFERDQAVWIAN
Ga0137399_1105638623300012203Vadose Zone SoilMKKIILLGFTLAFSSASGFCGDRHIAFERDQAVWIAKLDGTAEKKIADGIFP
Ga0137362_1162634123300012205Vadose Zone SoilMKKIILLGFVLAFSSASGFCADRQIAFERDQAVWIAKLDGTGEKKIADGIFP
Ga0137381_1046718413300012207Vadose Zone SoilMIRIIALLFALAACPASVFCGDRHVAFERNDAIYIANL
Ga0137376_1006950413300012208Vadose Zone SoilMRRIIALLFAVAASPASVFCGDRHIAFERNDAIYIANLDGT
Ga0137376_1142510713300012208Vadose Zone SoilMKKIILLGFALAFSPTSGFCGDRQIAFERDRAVWIAK
Ga0137376_1175149823300012208Vadose Zone SoilMKRMILLPFALAASSASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAIS
Ga0137378_1119464513300012210Vadose Zone SoilVKKIGLLAVVLVIPPAVAFCGDQHVAFERNNAVYLANLNGTGERKIADGIFPAISPDGTR
Ga0137370_1018182613300012285Vadose Zone SoilMKKIILLGFALAFSPTSGFCGDRQIAFERDRSVWIAKLVGTGEKKIADGI
Ga0137387_1061812613300012349Vadose Zone SoilMIRIIALLFALAASPASVFCGDRHVAFERNDAIYIANLD
Ga0137371_1133872013300012356Vadose Zone SoilMAMVRTILLLFALAASSPSVLCGDRNIAFERDQAVWIANLDGTGEKKIADGI
Ga0137373_1082450213300012532Vadose Zone SoilMKRTILLLFALAASSASVLCGDRHIAFERDQAVWLANL
Ga0137358_1018141013300012582Vadose Zone SoilMKRTILLLFALAASSASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAI
Ga0137358_1044164923300012582Vadose Zone SoilMKKIISLGFVLASLSAAFAGDRHIAFERNQAVWIANLDGTGEKKIADGTF
Ga0137358_1047548823300012582Vadose Zone SoilMKKIILLAFVLANSSASVFCSDRHIAFERNQAVWIANLDGTGEKKIADGTFPAISPDGT
Ga0137398_1022621413300012683Vadose Zone SoilMKKIILLGFTLAFSSASGFCGDRHIAFERDQAVWIAKLDGTGEKKIADG
Ga0157291_1022844023300012902SoilMKRMILLLFALAVLPVSVFCSDRQIAFERDQAVWVANFDG
Ga0157306_1012517223300012912SoilMKRMILLLFALAVLPVSVFCSDRQIAFERDQAVWVANFD
Ga0137395_1055662713300012917Vadose Zone SoilMKKIILLGFTLAFSSASGFCADRQIAFERDQAVWIAKLDG
Ga0126369_1072207113300012971Tropical Forest SoilMKRIFLVLVALAASPASVFCGERHIAFERNDAVYI
Ga0164304_1016396913300012986SoilMNRTILLLFALAASSTSVFCGDRHIAFERDQAVWLANLEGTGEKKIAD
Ga0134078_1016435213300014157Grasslands SoilMKKIIVLGFALVFSPSLVFCGDRHIAFERNQAVWIANLDGTG
Ga0137405_131055023300015053Vadose Zone SoilMKRTILLLFALAAAPASVFCGDRHIAFERDRTVWIANLDGTGEKKIADGIFP
Ga0132255_10563445123300015374Arabidopsis RhizosphereMKRMILLLFALAASSASVLCGDRQIAFERDQAVWLANLDG
Ga0182041_1043187013300016294SoilMKRTILLLCALAAAPVSVFCGDRHIAFERDQAVWIAN
Ga0182032_1028788023300016357SoilMRAMVAFALAASPSSIFCGDRQIAFERDQAVWIAHLDGTGE
Ga0182032_1186175623300016357SoilMKRVVLFLFAFAMSIVSAFCSDRHIAFERDQAVWIANLDGTGEKKI
Ga0184624_1045469923300018073Groundwater SedimentMKRTILLLFALAASPASVLCGDRHIAFERDQAVWIANLDGTGEKKIA
Ga0066655_1115926223300018431Grasslands SoilMKKIILLGFALAFSPTSGFCGDRQIAFERGQAVWIAKLDGTGEKKIAEGIF
Ga0193704_103190913300019867SoilMKRMILLLLALAASPISVFCGDRHIAFEREQAVWIANLDGTGEKKIADGIFPAILAGWNSHRS
Ga0193692_105993813300020000SoilMKRTILLLFALAAAPASVLCGDRHIAFERDQAVWIANLDG
Ga0193735_105193123300020006SoilMKRTILLLFALAASSASVFCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAISPDG
Ga0193757_100483923300020008SoilMKRTILLLFALAAAPASVLCGDRHIAFERDQAVWIANLDGTGEKKIADGIFPAISPD
Ga0193721_116449813300020018SoilMKRTILLLFALAASPASLFCDNRHIAFERDQAVWIANLDGTGEKKIADGIFPAI
Ga0193745_102981723300020059SoilMKRTILLLFALAASPASVLCGDRHIAFERDQAVWLANLDGTGEKKIAD
Ga0222623_1024845023300022694Groundwater SedimentMKRMILLLFALAASPASLFCDSRHIAFERDQAVWIANLDGTGEKKIADGIFPAISPDG
Ga0222622_1006135613300022756Groundwater SedimentMKRMILLLLALAASPISVFCGDRHIAFERDQAVWL
Ga0207692_1023529713300025898Corn, Switchgrass And Miscanthus RhizosphereMKRTILLFFALAASSASVLCGDRHIAFERDQAVWLANLD
Ga0207685_1052572423300025905Corn, Switchgrass And Miscanthus RhizosphereMNRMILLLFVLAASPASVLCGDRHIAFERDQAVWLANLDGTGEKKIADGIFPAISPD
Ga0207699_1040157723300025906Corn, Switchgrass And Miscanthus RhizosphereMKKTILLLFALAASPASVFCGDRHIAFERDQAVWIANLDGTGEK
Ga0207707_1110510023300025912Corn RhizosphereMTRTLVLLFALAAFPASLFSDNRHIAFEREQAVWIANLDGTAEKKIA
Ga0207663_1148872413300025916Corn, Switchgrass And Miscanthus RhizosphereMKRMIFLLFALAASPASVLCGDRHIAFERDQAVWLA
Ga0207662_1010613333300025918Switchgrass RhizosphereMKRTILLLFALAASPASVLCGDRHIAFERDQAVWIANLD
Ga0209161_1015941023300026548SoilMRRIIALLFALAASPASVFCGDRHVAFERNDAIYIANLDGT
Ga0307293_1005593423300028711SoilMKRMILLLLALAASPISVFCGDRHIAFEREQAVWIANLDGTGEKKIADGIFP
Ga0307299_1007698523300028793SoilMKRMILLLLALAASPISVFCGDRHIAFERDQAVWIANLDGTGE
Ga0170823_1718998713300031128Forest SoilLKRTILLLFALAASHASVFCGERHIAFERDQAVWLANLDGTGEKKIA
Ga0170824_10356113423300031231Forest SoilLKRTILLLFALAASPASVFCGERHIAFERDQAVWLANLDGTGEKKIADG
Ga0170820_1309456213300031446Forest SoilMKTMLLLFALAASPASVFCGDRHIAFERDQAVWLANLDGPREKKI
Ga0170820_1481553113300031446Forest SoilMKRTILLLFALAASHASVFCGERHIAFERDQAVWLANLDGTGEKKIADGI
Ga0170818_10811683423300031474Forest SoilMKRTMLLLFALAAFPSSLFCGDQHVGFEREQAVWIANLDGTGEKKIADGIFPAISP
Ga0310886_1036685813300031562SoilMKRAILLLFALAASHASVFRGDRQIAFERDQAVWLANLDGTGEKKIAD
Ga0306925_1167657223300031890SoilMKKIILLGFVLAISPASVFCGDRHIAFERDQAVWIANLDGTG
Ga0308173_1142776523300032074SoilMAMKRISLLLVALAVSPSSLFSDNRHIAFERDQAVWIANLDGTGEKKLRT
Ga0307471_10301423023300032180Hardwood Forest SoilMKRAILLFFALAASPASLFCDDRHIAFERDQAVWIANLDGTGEKKIADGI
Ga0307472_10216498913300032205Hardwood Forest SoilMKRTAFFLLALAASPASVFCGDRHMAFERDQAVWIANLDGIGEKKVA


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