NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105849

Metagenome Family F105849

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105849
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 45 residues
Representative Sequence SLLKLVKKKQANRANVVKVEEEADTDHKVVDLVKILKQSLGGKK
Number of Associated Samples 84
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.00 %
% of genes near scaffold ends (potentially truncated) 95.00 %
% of genes from short scaffolds (< 2000 bps) 94.00 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (84.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(11.000 % of family members)
Environment Ontology (ENVO) Unclassified
(55.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(65.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1CNBas_10009121
2JGI1027J12803_1051974742
3C688J35102_1196958432
4soilL1_100583013
5Ga0062593_1010229622
6Ga0062590_1016822742
7Ga0062595_1019899662
8Ga0062595_1022245572
9Ga0065704_108634952
10Ga0065715_109324521
11Ga0065707_109613251
12Ga0070670_1009523531
13Ga0070670_1017702201
14Ga0068869_1008642842
15Ga0070689_1005336432
16Ga0070692_106625031
17Ga0070688_1018221382
18Ga0070681_105841562
19Ga0070699_1008786311
20Ga0070679_1014211091
21Ga0070695_1006429142
22Ga0070665_1017829432
23Ga0068857_1010965402
24Ga0068852_1016091951
25Ga0068852_1028075121
26Ga0068859_1006757432
27Ga0068866_107047091
28Ga0068863_1003112782
29Ga0068863_1007910991
30Ga0068863_1024107082
31Ga0068858_1004278971
32Ga0068858_1005524351
33Ga0068860_1014108701
34Ga0075293_10070241
35Ga0082029_12077102
36Ga0097621_1017890841
37Ga0079222_124248002
38Ga0079216_100349641
39Ga0079216_102226992
40Ga0079219_100883781
41Ga0079219_106289782
42Ga0075419_111282811
43Ga0111539_125060941
44Ga0105247_112046562
45Ga0105243_116722621
46Ga0075423_107061481
47Ga0105242_128828121
48Ga0105237_100869641
49Ga0105249_121510692
50Ga0105249_127644871
51Ga0126307_112661852
52Ga0126307_115638502
53Ga0126304_112032242
54Ga0126310_102544991
55Ga0126311_114825881
56Ga0134125_126437811
57Ga0134126_130254641
58Ga0134127_123454971
59Ga0134127_134465551
60Ga0134122_109788422
61Ga0134122_120693871
62Ga0105246_119861331
63Ga0120191_101564352
64Ga0157373_115563181
65Ga0157372_123402281
66Ga0157375_130966831
67Ga0075331_10983442
68Ga0163163_103407991
69Ga0180074_10628761
70Ga0157379_113486942
71Ga0132257_1022955441
72Ga0190268_111736752
73Ga0190274_110069811
74Ga0207671_113894841
75Ga0207652_118567111
76Ga0207681_102154622
77Ga0207694_107558831
78Ga0207687_102917492
79Ga0207701_110120941
80Ga0207669_105470521
81Ga0207711_113523492
82Ga0207689_102186831
83Ga0207689_109585372
84Ga0207689_116482302
85Ga0207651_121327501
86Ga0207703_100884241
87Ga0207703_107587941
88Ga0207708_106161081
89Ga0207702_118638251
90Ga0207641_102690741
91Ga0207676_117799372
92Ga0207674_117908641
93Ga0209731_10404471
94Ga0209818_100007826
95Ga0209814_104573843
96Ga0307408_1002724022
97Ga0307408_1020089062
98Ga0307413_100676823
99Ga0307416_1033383291
100Ga0307414_110420812
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.56%    β-sheet: 0.00%    Coil/Unstructured: 69.44%
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Variant

510152025303540SLLKLVKKKQANRANVVKVEEEADTDHKVVDLVKILKQSLGGKKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
84.0%16.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Soil
Terrestrial Soil
Serpentine Soil
Terrestrial
Switchgrass Rhizosphere
Termite Nest
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Natural And Restored Wetlands
Rice Paddy Soil
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Quercus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
6.0%5.0%4.0%6.0%4.0%3.0%5.0%11.0%5.0%4.0%5.0%4.0%4.0%3.0%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
CNBas_100091213300000531Quercus RhizosphereKKKQTKRANVVKVAEEVDTDHKVIDLVQILKKSLDGKK*
JGI1027J12803_10519747423300000955SoilLVKKKQAKPSNVVRVESKERDEGNVIDLVQILKKSLSGKSK*
C688J35102_11969584323300002568SoilLADKQTDSLLKLVKKKEKKRENVVKVEEEVNTDRKVVDLVKILKQSLGGKK*
soilL1_1005830133300003267Sugarcane Root And Bulk SoilLKLVKKKQSKRENVVKVEDEMDTDRKVVDLVKILKQSLGGKK*
Ga0062593_10102296223300004114SoilKQTDDLLKLVKRKEKQRGNVVRVEPEVDTDNKVIDLVEVLKKSLGAKK*
Ga0062590_10168227423300004157SoilKLVKKKQANRANIVKVEEEADTDHKVVDLVQILKKSLGARK*
Ga0062595_10198996623300004479SoilVKKKEKKRENVVKVEDEMDTDRKVVDLVKILKQSLGGKK*
Ga0062595_10222455723300004479SoilVKKKQANRANIVKVEEEADTDHKVVDLVQILKKSLGAKK*
Ga0065704_1086349523300005289Switchgrass RhizosphereLKLVKKKQANRANVVKVEEEAETDHKVVDLVKILKQSLGGKK*
Ga0065715_1093245213300005293Miscanthus RhizosphereADKQTDDLLKLVKRKEKQRGSVVRVEPETDSDHKVVDLVQILKKSLGAKK*
Ga0065707_1096132513300005295Switchgrass RhizosphereVKKKQANRANVVKVEEEADTDHKVVDLVQILKKSLGAKK*
Ga0070670_10095235313300005331Switchgrass RhizosphereLKLVKKKQAKRSNVVKVDEEVDTDHKVVDLVSILKKSLSGKK*
Ga0070670_10177022013300005331Switchgrass RhizosphereKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0068869_10086428423300005334Miscanthus RhizosphereKQTDSLLKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0070689_10053364323300005340Switchgrass RhizosphereKQTDSLLKLVKKKQANRANVVKVEEEAETDHKVVDLVKILKQSLGGKK*
Ga0070692_1066250313300005345Corn, Switchgrass And Miscanthus RhizosphereTESLLKLVKKKQANRANIVKVEEEADTDHKVVDLVQILKKSLGARK*
Ga0070688_10182213823300005365Switchgrass RhizosphereKLVKKKEKQRGNVVRVETEGESDHKVVDLVAILKKSLGAKK*
Ga0070681_1058415623300005458Corn RhizosphereLVKKKQANRANVVKVEEDVDTDHKVVDLVQILKKSLGARK*
Ga0070699_10087863113300005518Corn, Switchgrass And Miscanthus RhizosphereLLKLVKKKQSKRGNVVKVEDEMESDHKVIDLVQVLKKSLGAKK*
Ga0070679_10142110913300005530Corn RhizosphereKLVKRKEKQRGNVVRVEPEVDTDNKVIDLVQVLKKSLGAKK*
Ga0070695_10064291423300005545Corn, Switchgrass And Miscanthus RhizosphereKQTDSLLKLVKKKQSKRGNVVKVEDEMETDHKVIDLVQVLKKSLGGKK*
Ga0070665_10178294323300005548Switchgrass RhizosphereKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0068857_10109654023300005577Corn RhizosphereKLADKQTDSLLKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0068852_10160919513300005616Corn RhizosphereSLLKLVKKKQANRANVVKVEEEADTDHKVVDLVKILKQSLGGKK*
Ga0068852_10280751213300005616Corn RhizosphereTDDLLKLVKKKEKKRGSVVEVETGGDSDRKVIDLVQVLKKSLAGKSS*
Ga0068859_10067574323300005617Switchgrass RhizosphereKKQAKRSNVVKVDEEVDTDHKVVDLVSILKKSLSGKK*
Ga0068866_1070470913300005718Miscanthus RhizosphereDKQTDSLLKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0068863_10031127823300005841Switchgrass RhizosphereDSLLKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0068863_10079109913300005841Switchgrass RhizosphereTESLLKLVKKKQANRANVVKVEEEADKDHKVVDLVQILKKSLGARK*
Ga0068863_10241070823300005841Switchgrass RhizosphereESLLKLVKKKQANRANVVKVEEEADTDHKVVDLVQILKKSLGAKK*
Ga0068858_10042789713300005842Switchgrass RhizospherePAKLADKQTDSLLKLVKKKQSKRENVVKVEEEMDTDHKVVDLVKILKQSLGGKK*
Ga0068858_10055243513300005842Switchgrass RhizosphereLEDKQTDSLLKLVKKKQANRANVVKVEEEAETDHKVVDLVKILKQSLGGKK*
Ga0068860_10141087013300005843Switchgrass RhizosphereKLVKKKQKKRGSVVEVDVEQETDQKVVDLVSILKKSLAGKAK*
Ga0075293_100702413300005875Rice Paddy SoilKKKEKKRENVVKVEEEVDTDRKVIDLVKILKQSLGGKK*
Ga0082029_120771023300006169Termite NestEDKQTDSLLKLVKKKQSKRGNVVKVEDEMETDHKVIDLVQVLKKSLGAKT*
Ga0097621_10178908413300006237Miscanthus RhizosphereKLVKKKQANRANVVKVAEEADTDHKVVDLVSILKKSLGARK*
Ga0079222_1242480023300006755Agricultural SoilTDELLKLVKKKEKQRGNVVRVETDEDTDHKVVDLVQILKKSLGGKK*
Ga0079216_1003496413300006918Agricultural SoilSLLKLVKQKQKKRANVVKVETEDTDHKVIDLVQILKKSLAGKGK*
Ga0079216_1022269923300006918Agricultural SoilSPTKLADKQTDDLLKLVKKKEKQRGNVVRVEAEADTDHKVIDLVQVLKRSLGGKK*
Ga0079219_1008837813300006954Agricultural SoilKKKEKKRENVVKVEDEMDTDRKVVDLVKILKQSLGGKK*
Ga0079219_1062897823300006954Agricultural SoilEDLLKLVKRKEKQRGNVVRVEQEADTDTKVIDLVQVLKKSLSAKK*
Ga0075419_1112828113300006969Populus RhizosphereKKKQKKRGSVVEVDVEADTDHKVVDLVQILKKSLAGKAK*
Ga0111539_1250609413300009094Populus RhizosphereKQAKASNVVKVEEEADTDHKVVDLVKILKQSLGGKK*
Ga0105247_1120465623300009101Switchgrass RhizosphereLADKQTDSLLKLVKKKQAKRANVVKVEEEADTDHKVVDLVKILKQSLGAKK*
Ga0105243_1167226213300009148Miscanthus RhizosphereKLVKKKKANRANVVKVEEEADPDRKVVDLVQILKKSLGAKK*
Ga0075423_1070614813300009162Populus RhizosphereKQTDSLLKLVKKKQAKASNVVKVAEEADTDHKVVDLVKILKQSLGGKK*
Ga0105242_1288281213300009176Miscanthus RhizosphereTKLADKQTDSLLKLVKKKEKKRENVVKVEDEVDTDRKVVDLVKILKQSLGGKK*
Ga0105237_1008696413300009545Corn RhizosphereKQTDSLLKLVKKKQGNRANVVKVEEEADTDHKVVDLVQILKKSLGAKK*
Ga0105249_1215106923300009553Switchgrass RhizosphereSLLKLVKKKQAKRSNVVKVEEEADTDHKVVDLVKILKQSLGAKK*
Ga0105249_1276448713300009553Switchgrass RhizosphereKKKEKKRGSVVEVETGGDSDRKVIDLVQVLKKSLAGKSS*
Ga0126307_1126618523300009789Serpentine SoilLKLVKKKQSKRENVVKVAEEMDTDHKVIDLVQVLKKSLGGKK*
Ga0126307_1156385023300009789Serpentine SoilSLLKLVKKKQAKSSNVVKVDEEVDTDNKVVDLVSILKKSLSGKK*
Ga0126304_1120322423300010037Serpentine SoilDKQTDSLLKLVKKKQTKRENVVKVEDEMETDRKVVDLVKILKQSLGGKK*
Ga0126310_1025449913300010044Serpentine SoilTDSLLKLVKKKQTKRENVVKVEDEMETDRKVVDLVKILKQSLGGK*
Ga0126311_1148258813300010045Serpentine SoilPTKLADKQTDSLLKLVKKKQSKRGAVVRVEEEAETDHKVVDLVQILKKSLGGKK*
Ga0134125_1264378113300010371Terrestrial SoilLVKKKQSKRGNVVKVEDEMETDHKVIDLVQVLKKSLGAKS*
Ga0134126_1302546413300010396Terrestrial SoilDELLKLVKRKEKQRGNVVRVEPEADTDNKVVDLVQILKKSLAGKK*
Ga0134127_1234549713300010399Terrestrial SoilDKQTESLLKLVKKKQANRANIVKVEEEADADHKVVDLVQILKKSLGARK*
Ga0134127_1344655513300010399Terrestrial SoilKKQAKRANVVKVEEEADTDHKVVDLVKILKQSLGAKK*
Ga0134122_1097884223300010400Terrestrial SoilLEDKQTESLLKLVKKKQANRANIVKVEEEADADHKVVDLVQILKKSLGARK*
Ga0134122_1206938713300010400Terrestrial SoilLLKLVKKKKANRANVVKVEEEADTDHKVVDLVQILKKSLGARK*
Ga0105246_1198613313300011119Miscanthus RhizosphereLADKQTDSLLKLVKKKQAKRANVVKVEEEIDTDHKVVDLVKILKQSLGAKK*
Ga0120191_1015643523300012022TerrestrialKLVKKKQAKRANVVRVEEEVDTDHKVIDLVQILKKSLSGKAK*
Ga0157373_1155631813300013100Corn RhizosphereDSLLKLVKKKEKKRENVVKVEEEVDTDRKVVDLVKILKQSLGGKK*
Ga0157372_1234022813300013307Corn RhizosphereTTLADKQTDSLLKLVKKKEKKRENVVKVEDEMDTDRKVVDLVKILKQSLGGKK*
Ga0157375_1309668313300013308Miscanthus RhizosphereDKQTDSLLKLVKKKQAKRSNVVKVEEEADTDHKVVDLVKILKQSLGGKK*
Ga0075331_109834423300014310Natural And Restored WetlandsLKLVKKKQSKRGAVVKVKEEMDTNHKVVDLVQILKKSLGGKK*
Ga0163163_1034079913300014325Switchgrass RhizosphereKQTDSLLKLVKKKQAKRSNVVKVEEEADTDHKVVDLVKILKQSLGAKK*
Ga0180074_106287613300014877SoilKRKQAKRSNVVRVESEERDEGKVIDLVQILKKSLSGKSN*
Ga0157379_1134869423300014968Switchgrass RhizosphereLKLVKKKQSKRENVVKVEEEMETDHKVVDLVKILKQSLGGKK*
Ga0132257_10229554413300015373Arabidopsis RhizosphereQANRANVVKVEEEADTDHKVVDLVKILKQSLGGKK*
Ga0190268_1117367523300018466SoilSPSKELADKQTDDLLKLVKKKEKKRSNVVEVETETADHKVIDLVQVLKKSLAGKSK
Ga0190274_1100698113300018476SoilPAKLADKQTDSLLKLVKKKQANRANVVKVEEEADTDHKVVDLIQILKKSLGARK
Ga0207671_1138948413300025914Corn RhizosphereFTPAKLADKQTDSLLKLVKKKQSKRENVVKVEEEMDTDHKVVDLVKILKQSLGGKK
Ga0207652_1185671113300025921Corn RhizosphereKLVKRKEKQRGNVVRVEPEVDTDNKVIDLVQVLKKSLGAKK
Ga0207681_1021546223300025923Switchgrass RhizosphereKLVKKKEKKRGSVVEVETGGDSDRKVIDLVQVLKKSLAGKSS
Ga0207694_1075588313300025924Corn RhizosphereSLLKLVKKKQSKRENVVKVEEEIDTDHKVVDLVKILKQSLGGKK
Ga0207687_1029174923300025927Miscanthus RhizosphereLLKLVKKKEKKRENVVKVEEEIDTDRKVVDLVKILKQSLGGKK
Ga0207701_1101209413300025930Corn, Switchgrass And Miscanthus RhizosphereVKKKEKKRENVVKVEDEMDTDRKVVDLVKILKQSLGGKK
Ga0207669_1054705213300025937Miscanthus RhizosphereKLVKKKQSKRENVVKVEEEMDTDHKVVDLVKILKQSLGGKK
Ga0207711_1135234923300025941Switchgrass RhizosphereKKKQSKRENVVKVEEEMDTDHKVVDLVKILKQSLGGKK
Ga0207689_1021868313300025942Miscanthus RhizosphereKQAKRSNVVKVEEEVDTDHKVVDLVSILKKSLSGKK
Ga0207689_1095853723300025942Miscanthus RhizosphereTKLADKQSDSLLKLVKKKEKKRENVVKVEEEVDTDRKVVDLVKILKQSLGWKK
Ga0207689_1164823023300025942Miscanthus RhizosphereFTPTKLADKQTDSLLKLVKKKQAKRANVVKVEEEIDTDHKVVDLVKILKQSLGAKK
Ga0207651_1213275013300025960Switchgrass RhizosphereDSLLKLVKKKEKKRENVVKVEDEVDTDRKVVDLVKILKQSLGGKK
Ga0207703_1008842413300026035Switchgrass RhizosphereTKLADKQTDSLLKLVKKKQAKRSNVVKVEEEADTDHKVVDLVKILKQSLGGKK
Ga0207703_1075879413300026035Switchgrass RhizosphereSLLKLVKKKQANRANVVKVEEEAETDHKVVDLVKILKQSLGGKK
Ga0207708_1061610813300026075Corn, Switchgrass And Miscanthus RhizosphereDKQTDSLLKLVKKKQSKRENVVKVEEAMETDHKVVDLVKILKQSLGGKK
Ga0207702_1186382513300026078Corn RhizosphereSLLKLVKKKQGNRANVVKVEEEADTDHKVVDLVQILKKSLGAKK
Ga0207641_1026907413300026088Switchgrass RhizosphereKKKQAKRSNVVKVDEEVDTDHKVVDLVSILKKSLSGKK
Ga0207676_1177993723300026095Switchgrass RhizosphereMQSKKKQSKRENVVKVEEEMDTDHKVVDLVKILKQSLGGKK
Ga0207674_1179086413300026116Corn RhizosphereTKLADKQTDSLLKLVKKKQAKRSNVVKVDEEVDTDHKVVDLVSILKKSLSGKK
Ga0209731_104044713300027326Forest SoilLVKKKQAKRSNIVKVEEEVDTDHKVVDLVKILKQSLGGKK
Ga0209818_1000078263300027637Agricultural SoilVKQKQKKRANVVKVETEDTDHKVIDLVQILKKSLAGKGK
Ga0209814_1045738433300027873Populus RhizosphereLKLVKKKQAKASNVVKVEEEADTDHKVVDLVKILKQSLGGKK
Ga0307408_10027240223300031548RhizosphereKLADKQTDSLLKLVKKKQAKRSNVVKVDEEVDTDHKVVDLVSILKKSLSGKK
Ga0307408_10200890623300031548RhizosphereADKQTDELLKLVKQKQKKRSNVVEVDVEADTDHKVVDLVQILKKSLAGKAK
Ga0307413_1006768233300031824RhizosphereDKQTESLLKLVKKKQANRANVVKVEEEADTDHKVVDLVQILKKSLGAKK
Ga0307416_10333832913300032002RhizosphereTDDLLKLVKRKEKQRGNVVRVEPEADTDHKVVDLVQILKKSLGGKK
Ga0307414_1104208123300032004RhizosphereTDSLLKLVKKKQSKRANVVRVEEEATDHKVIDLVQVLKKSLGGKK


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