NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105768

Metagenome / Metatranscriptome Family F105768

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105768
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 53 residues
Representative Sequence RYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRGAELWVYETRD
Number of Associated Samples 88
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 96.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.
1AF_2010_repII_A001DRAFT_101208081
2JGI25613J43889_101904092
3Ga0070681_116907161
4Ga0070735_109167002
5Ga0070730_106790692
6Ga0070733_103885322
7Ga0070762_100220261
8Ga0070762_108020901
9Ga0070717_107378111
10Ga0070716_1002327101
11Ga0068871_1020882781
12Ga0079222_118474271
13Ga0079222_121981302
14Ga0079222_122670563
15Ga0066659_116452512
16Ga0079221_114796801
17Ga0075436_1001373791
18Ga0079219_116273451
19Ga0099791_105611772
20Ga0102924_12133902
21Ga0099829_114036041
22Ga0099827_101002903
23Ga0099792_108674771
24Ga0126373_120933062
25Ga0126373_121407232
26Ga0134126_109874002
27Ga0134126_117986552
28Ga0137393_117247131
29Ga0137388_107161481
30Ga0137383_103174473
31Ga0137362_113549691
32Ga0137362_115361642
33Ga0137376_107804071
34Ga0137376_112613351
35Ga0137386_102932892
36Ga0137384_103772672
37Ga0137385_107102032
38Ga0137390_113155191
39Ga0137398_101840091
40Ga0137394_104630071
41Ga0137359_109031722
42Ga0137419_109877122
43Ga0137404_121894851
44Ga0153915_114279362
45Ga0137410_108539082
46Ga0164301_101881052
47Ga0164301_107008431
48Ga0137412_111554221
49Ga0182041_108039661
50Ga0182033_105780481
51Ga0182035_113401211
52Ga0182034_105007141
53Ga0182038_104970971
54Ga0187821_101774502
55Ga0193722_10775382
56Ga0210407_114209801
57Ga0210403_104785071
58Ga0210399_101802101
59Ga0210399_106291731
60Ga0210404_104725412
61Ga0210408_101745034
62Ga0210388_100716246
63Ga0210393_104058331
64Ga0210383_106930061
65Ga0126371_124082791
66Ga0233357_10443282
67Ga0207707_102900132
68Ga0207663_104195911
69Ga0207660_102487174
70Ga0207660_117321252
71Ga0207700_107753482
72Ga0208651_10148252
73Ga0257171_10482161
74Ga0179587_106186751
75Ga0209008_10278162
76Ga0209693_101167524
77Ga0209166_104627371
78Ga0209006_108099791
79Ga0209069_100598242
80Ga0209526_100667091
81Ga0308309_117994171
82Ga0265462_121868312
83Ga0073994_121688511
84Ga0170834_1102538022
85Ga0170834_1138499061
86Ga0170824_1089873192
87Ga0170824_1130837352
88Ga0318560_104654581
89Ga0310686_1161142193
90Ga0307476_101943041
91Ga0310813_118817812
92Ga0306917_103040131
93Ga0307473_110171882
94Ga0306925_109767251
95Ga0310916_111853591
96Ga0306926_108809362
97Ga0306922_103904313
98Ga0318532_102869272
99Ga0306920_1036446302
100Ga0310914_118676562
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 50.00%    Coil/Unstructured: 50.00%
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Variant

5101520253035404550RYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRGAELWVYETRDSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
88.0%12.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Wetlands
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Rice Paddy Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
5.0%23.0%3.0%4.0%5.0%17.0%5.0%10.0%3.0%4.0%4.0%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A001DRAFT_1012080813300000793Forest SoilMAKVPSTIGARTSAYFGQVGKHNSLYLAIPNRSDKGAELWVYETRD*
JGI25613J43889_1019040923300002907Grasslands SoilDNYKRLAKIPTAIGARTSAYAGQVGKHNSLYLAVPARVFKSAEVWVYETRD*
Ga0070681_1169071613300005458Corn RhizosphereTAIGARTSSYTGQVGKHNSMYLAVPARANRGAEMWVFETRD*
Ga0070735_1091670023300005534Surface SoilDHYFLIGKVPSTIGARTSAYFGQVGKHNSLYLAVSARASRGAELWVYETRD*
Ga0070730_1067906923300005537Surface SoilSGEGFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD*
Ga0070733_1038853223300005541Surface SoilYTLLAKVPSEIGGRTSAYFGQVGKHNSLYLAVPGRSNRDAELWVYETRDTIGAP*
Ga0070762_1002202613300005602SoilIDADRYERIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD*
Ga0070762_1080209013300005602SoilIFVYQQIDADRYQRIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0070717_1073781113300006028Corn, Switchgrass And Miscanthus RhizosphereREAKIPTAIGARTSSYSGQVGKHNSLYLAVPARVFKGAELWVYETRE*
Ga0070716_10023271013300006173Corn, Switchgrass And Miscanthus RhizosphereARTSAYYGQVGKHNSLYLAVPGRTNRGAELWIYETRE*
Ga0068871_10208827813300006358Miscanthus RhizosphereADRYQRIAKIPSAIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD*
Ga0079222_1184742713300006755Agricultural SoilIFVYQQVDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0079222_1219813023300006755Agricultural SoilAKIPSAIGARTSAYFGQVGKHNSLYVAVPALANRGAEMWVYETRD*
Ga0079222_1226705633300006755Agricultural SoilQIDADRYQRIAKIPTAIGARTSAYTGQVGKHNSFYLAVPARADRGAELWIYETRD*
Ga0066659_1164525123300006797SoilDRYERIAKIPTTIGARTSAYTGQVGKHNSFYLAVPARADRGAELWVYETRD*
Ga0079221_1147968013300006804Agricultural SoilIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD*
Ga0075436_10013737913300006914Populus RhizosphereFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANQGAEMWVYETRDWVSEASPGGQGMR*
Ga0079219_1162734513300006954Agricultural SoilARTSAYFGQVGKHNSLYVAVPARADRGAEMWVYETRD*
Ga0099791_1056117723300007255Vadose Zone SoilASDTDDMWYDPTRKRIYIPSGEGFIFVYQQIDADRCERIAKIPSGIGARTSVYTGQVGQHNSLYLAVPGRSNKGAELWIYKTRD*
Ga0102924_121339023300007982Iron-Sulfur Acid SpringKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRDAELWVYETRD*
Ga0099829_1140360413300009038Vadose Zone SoilQIDADRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRSAELWVYETRD*
Ga0099827_1010029033300009090Vadose Zone SoilDPDRYERIAKIPTTIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD*
Ga0099792_1086747713300009143Vadose Zone SoilKIPTAIGARTSAYAGQVGKHNSLYLAVPARVFKSAEVWVYETRD*
Ga0126373_1209330623300010048Tropical Forest SoilFVYQQIDPDRYQRIAKIPTTIGARTSVYTGQVGKHNSFYLAVPARADRGAELWVYETRD*
Ga0126373_1214072323300010048Tropical Forest SoilGFLFVYQQIDPDRYERIAKIPTAVGARTSAYYGQVGKHNSLYLAVPARASRGAELWIYETRD*
Ga0134126_1098740023300010396Terrestrial SoilFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYLAVPARANRGAEMWVYETRD*
Ga0134126_1179865523300010396Terrestrial SoilFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD*
Ga0137393_1172471313300011271Vadose Zone SoilRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRGAELWVYETRD*
Ga0137388_1071614813300012189Vadose Zone SoilQQIDADRYERIAKIPTAIGARTSAYYGPVGKHNSLYLAVPARADRSAELWVYETRD*
Ga0137383_1031744733300012199Vadose Zone SoilGFIFVYQQIDADRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRSAELWVYETRD*
Ga0137362_1135496913300012205Vadose Zone SoilTSTYVGQVGKHNSLYLAVPARVFKSAEVWVYETRD*
Ga0137362_1153616423300012205Vadose Zone SoilERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD*
Ga0137376_1078040713300012208Vadose Zone SoilHYKRLAKIPTAIGARTSTYVGQVGKHNSLYLAVPARVFKSAEVWVYETRD*
Ga0137376_1126133513300012208Vadose Zone SoilAKIPTAIGARTSTYVGQVGKHNSLYLAVPARVFKGAEVWVYETRD*
Ga0137386_1029328923300012351Vadose Zone SoilQIDPDRYERIAKIATAIGARTSAYYGQVGKHNTLYLAVPGRADRGAELWFYETRD*
Ga0137384_1037726723300012357Vadose Zone SoilVPSGEGFIFVYQQIDADRYERIAKIPTAIGARTSAYYGQVGKHNTLYLAVPARADRGAELWFYETRD*
Ga0137385_1071020323300012359Vadose Zone SoilKSPTAIGARTSAYAGQVGKHNSLYLAVPARVFKSAEVWVYETRD*
Ga0137390_1131551913300012363Vadose Zone SoilERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARADRGAELWVYETRD*
Ga0137398_1018400913300012683Vadose Zone SoilYQQIDPDRYERIAKIPTTIGARTSAYTGQVGKHNSFYLAVPARADRGAEIWVYETRD*
Ga0137394_1046300713300012922Vadose Zone SoilQIDADRYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD*
Ga0137359_1090317223300012923Vadose Zone SoilYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRANKGAELWIYETRD*
Ga0137419_1098771223300012925Vadose Zone SoilDADRYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRANKGAELWIYETRD*
Ga0137404_1218948513300012929Vadose Zone SoilADRYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRANKGAELWIYETRD*
Ga0153915_1142793623300012931Freshwater WetlandsIPSAVGARTSVYYGQVGKHNSLYLAVPGRSNKGAELWIYETRD*
Ga0137410_1085390823300012944Vadose Zone SoilSGEGFIFVYQQIDADRYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD*
Ga0164301_1018810523300012960SoilDADHYKRLAKIPTAIGARTSAYAGQVGKHNSLYLAVPARVFKGAEVWVYETRD*
Ga0164301_1070084313300012960SoilEGYIFVYQQIDADRYQRIAKIPSAIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD*
Ga0137412_1115542213300015242Vadose Zone SoilIAKIPTAIGARTSAYYGQVGKHNTLYVAVPARANRGAELWFYETRD*
Ga0182041_1080396613300016294SoilYQRIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0182033_1057804813300016319SoilTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0182035_1134012113300016341SoilYQRIAKLPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0182034_1050071413300016371SoilPSGEGFIFVYQQIDPDRYQRIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0182038_1049709713300016445SoilTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0187821_1017745023300017936Freshwater SedimentAIGARTSAYTGQVGKHNSFYLAVPARSGRDAELWVYETRD
Ga0193722_107753823300019877SoilKIPTAIGARTSAYAGQVGKHNSLYLAVPARVFKSAEVWVYETRD
Ga0210407_1142098013300020579SoilAEGFIFVYQQIDADRYERIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRDAELWVYETRD
Ga0210403_1047850713300020580SoilYQQIDADRYERIAKIPTAIGARTSAYYGQVGKHNTLYLAVPARADRGAELWFYETRD
Ga0210399_1018021013300020581SoilDADRYQRIAKIPTAIGARTSAYTGQVGKHNSFYLAVPARADRGAELWVYETRD
Ga0210399_1062917313300020581SoilDRYERIAKIPSAIGARTSVYTGQVGKHNSLYLPVPGRSNKGAELWIYETRD
Ga0210404_1047254123300021088SoilFIFVYQQIDADRYERIAKIPTAIGARTSAYYGQVGKHNTLYVAVPARANRGAELWFYETR
Ga0210408_1017450343300021178SoilYKRLAKIPTAIGARTSAYAGQVGKHNSLYLAVPARVFKGAEVWVYETRD
Ga0210388_1007162463300021181SoilVYQQIDADRYERIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0210393_1040583313300021401SoilSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRE
Ga0210383_1069300613300021407SoilGEGFIFVYQQIDPNRYQRIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWIYETRD
Ga0126371_1240827913300021560Tropical Forest SoilPTTIGARTSVYTGQVGKHNSFYLAIPARADRGAELWVYETRD
Ga0233357_104432823300023056SoilFVYQQIDPDRYQRIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0207707_1029001323300025912Corn RhizosphereYVPSGEGFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0207663_1041959113300025916Corn, Switchgrass And Miscanthus RhizospherePTAIGARTSAYYGQVGKHNTLYVAVPARANRGAELWFYETRD
Ga0207660_1024871743300025917Corn RhizosphereARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0207660_1173212523300025917Corn RhizosphereGARTSAYFGQVGKHNSLYLAVPARANRGAEMWVYETRD
Ga0207700_1077534823300025928Corn, Switchgrass And Miscanthus RhizosphereSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0208651_101482523300025998Rice Paddy SoilVPSGEGFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0257171_104821613300026377SoilADRYERIAKIPSAIGARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD
Ga0179587_1061867513300026557Vadose Zone SoilIGARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD
Ga0209008_102781623300027545Forest SoilADRYQRIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0209693_1011675243300027855SoilIFVYQQIDADRYERIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0209166_1046273713300027857Surface SoilSGEGFIFVFQQIDADHYARIAKIPSAIGARTSAYFGQVGKHNSLYVAVPARANRGAEMWVYETRD
Ga0209006_1080997913300027908Forest SoilQIDPNRYQRIAKIPTMIGARTSAYTGQVGKHNSFYLAVPARANRGAEIWVYETRD
Ga0209069_1005982423300027915WatershedsGFIFVYQQIDPDRYQRIAKIPTAIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD
Ga0209526_1006670913300028047Forest SoilVRSGEGFIFVYQQIDADRYERIAKIPTAIGARTSAYYGQVGKHNTLYLAVPARADRGAELWFYETRD
Ga0308309_1179941713300028906SoilIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD
Ga0265462_1218683123300030738SoilDADRYERIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETRD
Ga0073994_1216885113300030991SoilFIFVYQQIDPDRYQRIAKIPSAIGARTSAYYGQVGKHNSLYLAVPGRSNRGAELWVYETR
Ga0170834_11025380223300031057Forest SoilEGFIFVYRQIDADRYERIAKIPSAIGARTSVYTGKVGKHNSLYLAVPGRSNKGAELWIYETRD
Ga0170834_11384990613300031057Forest SoilRTSAYYGQVGKHNSLYLAVPGRSSRAAELWVYETRD
Ga0170824_10898731923300031231Forest SoilRYERIAKIPTTIGARTSAYTGQVGKHNSFYLAVPARADRGAELWVYETRD
Ga0170824_11308373523300031231Forest SoilPSGEGFIFVYQQIDADRYERIAKIPSAICARTSVYTGQVGKHNSLYLAVPGRSNKGAELWIYETRD
Ga0318560_1046545813300031682SoilPSGEGFMYCYRQIDADHYEREAKLPTAIGARTSSYSGQVGKHNSLYLAVPARVFKGAELWIYETRDS
Ga0310686_11611421933300031708SoilEGFIFVYQQIDADRYQRIAKIPTAIGARTSAYTGQVGKHNSFYLAVPARADRGAEIWVYETRD
Ga0307476_1019430413300031715Hardwood Forest SoilFVFVYQQIDPDRYQRIAKIPTAIGARTSAYTGQVGKHNSFYLAVPARADRGAELWVYETR
Ga0310813_1188178123300031716SoilIDADRYQRIAKIPSAIGARTSAYTGQVGKHNSFYLAVPARANRGAELWVYETRD
Ga0306917_1030401313300031719SoilDPDRYQRIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0307473_1101718823300031820Hardwood Forest SoilHYEREAKIPTAIGARTSSYSGQVGKHNSLYLAVPARVFKGAELWVYETRD
Ga0306925_1097672513300031890SoilEGFIFVYQQIDPDRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0310916_1118535913300031942SoilGEGFMYCYRQIDADHYEREAKLPTAIGARTSSYSGQVGKHNSLYLAVPARVFKGAELWIYETRDS
Ga0306926_1088093623300031954SoilSGEGFIFVYQEIDPDRYQRIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0306922_1039043133300032001SoilKLPTAIGARTSSYSGQVGKHNSLYLAVPARVFKGAELWIYETRDS
Ga0318532_1028692723300032051SoilIDPDRYQRIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0306920_10364463023300032261SoilIFVYQQIDPDRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD
Ga0310914_1186765623300033289SoilSGEGFIFVYQQIDPDRYERIAKIPTAIGARTSAYYGQVGKHNSLYLAVPARANRGAELWIYETRD


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