Metagenome Family F105748

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F105748
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	41 residues
Representative Sequence	GVVYLPNADKYRRLTRRPSQEQKGLDERALMASQRPSPPW
Number of Associated Samples	83
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	2.00 %
% of genes from short scaffolds (< 2000 bps)	1.00 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (98.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.000 % of family members)
Environment Ontology (ENVO)	Unclassified (26.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.65% β-sheet: 0.00% Coil/Unstructured: 57.35%
Feature Viewer
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF02371	Transposase_20	2.00
PF13358	DDE_3	2.00
PF13551	HTH_29	1.00
PF04365	BrnT_toxin	1.00
PF13620	CarboxypepD_reg	1.00
PF12006	DUF3500	1.00
PF06782	UPF0236	1.00
PF03400	DDE_Tnp_IS1	1.00
PF09360	zf-CDGSH	1.00
PF00583	Acetyltransf_1	1.00

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COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.00
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	1.00
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	2.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	98.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	98.00 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	98.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005553\|Ga0066695_10772021	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300012350\|Ga0137372_10074234	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2917	Open in IMG/M

Showing 1 to 2 of 2 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.00%
Host-Associated	Host-Associated	22.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	22.00%
Terrestrial	Environmental → Terrestrial	78.00%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.00%
Soil	Environmental → Terrestrial → Soil	78.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.00%
Sand	Environmental → Terrestrial → Soil → Sand	6.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.00%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.00%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.00%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.00%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M

Showing 1 to 10 of 83 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_105885021	3300000953	Soil	VVSLQRAGKYQRLAWRPSQEQKGLDERALMAALQPSPPS*
JGI1027J12803_1094462983	3300000955	Soil	VDGTSLRVVYLYAAAKYHRRTRRLSQEQKGRDERALMAS*
JGI25384J37096_101588422	3300002561	Grasslands Soil	RAVYLSPAAKYHRLTRRLSQGQKGLKERALMASQRPSHPW*
Ga0066397_100496282	3300004281	Tropical Forest Soil	AVYLPTADKYRRLTRRLSQGQKGLEERALMASQQPSEPW*
Ga0066397_100860652	3300004281	Tropical Forest Soil	PVMYLAAAGKYLRLTHRPSQGQKDLDERGIIASQQLSDPW*
Ga0066395_100332745	3300004633	Tropical Forest Soil	WVVYLRPADKYPRFTRRLSQEQKGLEERALMASQRPSDPW*
Ga0066395_101462562	3300004633	Tropical Forest Soil	VVYLPNADKYRGLTRRPPQGHKGLDERALMASQRPLHPW*
Ga0066809_100131872	3300005168	Soil	MSHWVVYLPNADKYRRLTRRPSQGQKGLDERALMASQRPS
Ga0066683_107419852	3300005172	Soil	LQQAVYLAAAAKYRRLTHRLSQEQKGLDERALMVSQRPSHLW*
Ga0066685_110966171	3300005180	Soil	VVYLSPADKYHRLTRRLPQGQKGLKERAIMASQRPSPPW*
Ga0066675_108278852	3300005187	Soil	MVQKPVDNLTLSAAEVVYLLRADKSPRLTCRPSQGQKGLKERALMASQRPSEPW*
Ga0065705_101547741	3300005294	Switchgrass Rhizosphere	VVYLSPAGKYKKPAWRLSQEQKGLDERPLKASSRPSEPW*
Ga0065705_103985704	3300005294	Switchgrass Rhizosphere	VYLAAAAKYRRLTPRLSQEQKGLDERARTASQWPLPPVDV
Ga0070668_1017634831	3300005347	Switchgrass Rhizosphere	AVVYLSPADKYHRLTRRLSQGQKSLDERALLASQWPSEPW*
Ga0070667_1007693092	3300005367	Switchgrass Rhizosphere	VVYLLRADKSPRLTRRPSQEQKGLGERARMASQRSSEAW*
Ga0070700_1000544174	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VVYLLRADKSPRLTRRPSQEQKGLDERARMASQRSSEAW*
Ga0066682_106517421	3300005450	Soil	VVYLPNADKYRGLTRRPSQGHKGLDERTLMASQRPFHPW*
Ga0070706_1016540101	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LVGGIAVVYLEPADKYPRLIRRLPQGQKGLDERALMASRWPSHPW*
Ga0070706_1017823441	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIFQLIEYWVVYLGPADKYHRFTRRPSQEHKGLDERAIMASQWPS
Ga0070697_1018291881	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VYLPTADKYRRLTRRLSKGQKGLEERARMASQRPSPRMVKKL
Ga0070686_1000859831	3300005544	Switchgrass Rhizosphere	MEWVVYLLRADKSPRLTRRPSQEQKGLDERARMASQRSSEAW*
Ga0070695_1011696561	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VVYLPNADKYRRLTRRPSQGQKGLDERTLMASQRPFHPW*
Ga0066701_108201701	3300005552	Soil	VVYLSPADKYHRLIRRLSQGQKGLEERDLMASQRPFEPW*
Ga0066701_108234631	3300005552	Soil	MIQYKVVYLSPADKYRRLTRRLSQDQKGLEERALMAS
Ga0066695_107614211	3300005553	Soil	TVRLGASASPERVVYLPNADKYRGLTHRLLQEQKGLDERALMASQRPSAPW*
Ga0066695_107720211	3300005553	Soil	YLSPADKYHRLTRRLSQAQEGLEERALRTSQRPSEPW*
Ga0066707_103367562	3300005556	Soil	AVYLAAADKYRRHTHRLSQEHKGLDERALMVSQRRSHLW*
Ga0066707_109485981	3300005556	Soil	MQEVVYLSPADKSHRLTRRLSQEQKGLEERALMASQRPSEP
Ga0066698_101231392	3300005558	Soil	EAVYLAAAAKYRRLTHRLSQEQKGLDERALMVSQRPSHLW*
Ga0066698_101491503	3300005558	Soil	VVYLPNADKYRGLTHRLLQEQKGLDERALMASQRPSAPW*
Ga0066694_104380651	3300005574	Soil	RAVYLAAAAKYRRLTHRLSQEQKGLDERALMVSQRPSHLW*
Ga0068852_1023180192	3300005616	Corn Rhizosphere	VVYLPNADKYRRLTRRPSQEQKGLDERARMASQRSSEAW*
Ga0066905_1020088592	3300005713	Tropical Forest Soil	AAVYLSPADKSHRLTRRLSQEQKGLEERALMASQRPSAPW*
Ga0066903_1011370771	3300005764	Tropical Forest Soil	MYLWAADKSPRLTCQLSQEQKGLDERARMASQRPS
Ga0066903_1012143893	3300005764	Tropical Forest Soil	VYLPTADKYRRLTRRLSQGQKGLEEWALMASQQPSEPW
Ga0066903_1029327981	3300005764	Tropical Forest Soil	AVVYLSPADKYHRLTHRLSQEQKGLEERALMASQRPFHPW*
Ga0070716_1005745372	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AVYLHPADKYRRLTYRLSKGQKGLGERALMVSQRLSDS*
Ga0066665_101121974	3300006796	Soil	VVYLSPADKYRRLTHRSSQGQKGLAERALMASQWPSHLW*
Ga0075428_1003860211	3300006844	Populus Rhizosphere	MTHRRVVYLSPADKYHRLTHRPSQGQKGLDERAIITSPWSSH
Ga0075421_1008818873	3300006845	Populus Rhizosphere	AVYLHPADKYYRLTRRPSQGQKGLDERAIMASQWPSHPW*
Ga0075421_1010985972	3300006845	Populus Rhizosphere	WVVYLSPADKYRMLTRRLSKDQKGLEERALMASQRPFHPW*
Ga0075430_1008509812	3300006846	Populus Rhizosphere	VYLHPAAKYRRLTPRLSQEQKGLDERTRMASQWPSPPGDAFDAGHVT
Ga0075430_1014277662	3300006846	Populus Rhizosphere	RHVAVYLHTADKYRRFTRRPPQGQKDLDERARMVS*
Ga0075433_108460752	3300006852	Populus Rhizosphere	VVYLSPADKYHRLTHRLSQEQKGLEERALMASQRSFHPW*
Ga0075433_115663182	3300006852	Populus Rhizosphere	RVVYLSPADKYRMLTRRLSKDQKGLEERALMASQRPFHPW*
Ga0075420_1019224261	3300006853	Populus Rhizosphere	GVVYLPNADKYRRLTRRPSQEQKGLDERALMASQRPSPPW*
Ga0075425_1012692873	3300006854	Populus Rhizosphere	VVYLPNADKYRRLTRRPSQGQKGIDERTLMTSQRPFHPW*
Ga0075434_1005248184	3300006871	Populus Rhizosphere	MEWAVYLHTADKYRRSTRRPPQGQKGLDERARMVSSR
Ga0075429_1007014401	3300006880	Populus Rhizosphere	WAVYLHPADKYRRLTYRLSKGQKGLGERALMVSQRLSDS*
Ga0075419_109868862	3300006969	Populus Rhizosphere	MSKLTVVYLPTADKYRGLTRRPLQEQKGLDERALMASQRPSAPW*
Ga0075435_1019621171	3300007076	Populus Rhizosphere	RKTPRTRGKWVVYLRPAGKYQRPAWRLSQEQKSLDERPLKASQRPSEPW*
Ga0066710_1004911842	3300009012	Grasslands Soil	AVYLAAAAKYRRLTHRLSQEQKGLDERALMVSQRPSHLW
Ga0099829_104782871	3300009038	Vadose Zone Soil	MAADNWVVYLHPADNYPSLIRRPSQGQKDLYEKALMASQRPSPP
Ga0075418_109555662	3300009100	Populus Rhizosphere	VVYLSPADKYRMLTRRLSKDQKGLEERALMASQRPFHPW*
Ga0114129_102700943	3300009147	Populus Rhizosphere	MSKLTVVYLPTADKYRGLTRRPPQEQKGLDERTRMASQRPFPAS*
Ga0105069_10348691	3300009800	Groundwater Sand	MKEVVYLATADKYPRLIRRPSQGQKSREERALMASQRPSDPG*
Ga0105062_10506141	3300009817	Groundwater Sand	VVYLRSADKYHSLTRRLSQGQKGLHEMALLASQRPSHPW*
Ga0105064_10263134	3300009821	Groundwater Sand	ALVVYLPTADKYRRLTRRPLQGQKGLDEKTLLAAQRPLHPW*
Ga0126312_114771961	3300010041	Serpentine Soil	VYLAAADKYRRLTHRLSQEPKGIDERAFMAFQRASHSW*
Ga0126384_115678932	3300010046	Tropical Forest Soil	WAVYLPTADKYRRLTRRLSQGQKGLEEWALMASQQPSEPW*
Ga0134071_103595502	3300010336	Grasslands Soil	DAMPLRVVYLHTADKYHGFTHRPSPGQKGMDEKAIMASQWPSEPW*
Ga0126370_119730791	3300010358	Tropical Forest Soil	MVLEARCRVVYLSPADNSLRLTRQLSQGLKVLDEWALMTSQQP
Ga0126376_109927601	3300010359	Tropical Forest Soil	AVYLPTADKYRRLTRRLSQGQKGLEERALMASQQPAEPW*
Ga0126379_110961132	3300010366	Tropical Forest Soil	VYLHHAAKYRRLTPRLSQEQKGLDERTRMASQWPSPPGDAFDA
Ga0134123_132009101	3300010403	Terrestrial Soil	AKRPVVYLHSADKYHRLTRRPLQGQKGLDERPLLASQ*
Ga0137391_102514471	3300011270	Vadose Zone Soil	MVSLSPADTYHMRTRRPSQEQKGLDERAIMTSQWPSHPW
Ga0137388_116960711	3300012189	Vadose Zone Soil	VVSLGFHRPVVYLHTADKYHRLTRRPSQDQKGLEERPIMVS
Ga0137363_107764551	3300012202	Vadose Zone Soil	RSRVALLGVVYLHHADKYHRLTRRLSQGQKSLDERAIMASQRPSHPW*
Ga0137380_102609081	3300012206	Vadose Zone Soil	VVYLAAADKYRRLTQRLSQEQKGLDERVLMVSQWPSHLW*
Ga0137380_112496891	3300012206	Vadose Zone Soil	HLAVYLHPADKYYRLTRRPSQGQKGLDERAIMASQWPSHPW*
Ga0137372_100742343	3300012350	Vadose Zone Soil	VVYLAPADKYRRLTQRLSQEQKGLDERVLMVSQWPSHLW*
Ga0137367_100538105	3300012353	Vadose Zone Soil	VVYLHHTDKYPRLTHRLSQEQKGLDKRALMASQRPSEP*
Ga0137369_103651253	3300012355	Vadose Zone Soil	VVYLPNADKYRGLTHRLSQGQKGLDERTLMASQRPFHPW*
Ga0137360_102607042	3300012361	Vadose Zone Soil	MITVELVVYLSPADKYHRFTRRLSKGQKVLQERALLASQRPSEPW*
Ga0137395_105307501	3300012917	Vadose Zone Soil	KFEAESVVYLHPADKYPRLTHRPSQEQKGLYERALMAS*
Ga0137395_110803313	3300012917	Vadose Zone Soil	YLLNADKYRGLTRRPLQEQKGLEERTLMASQRPFHPW*
Ga0137394_113813821	3300012922	Vadose Zone Soil	VYLPTADTYRGLTRRPSQEQKGLDKRTLMASQQPFHP
Ga0126369_119225742	3300012971	Tropical Forest Soil	STAIHMRWAVYLSPAEKYHRLTRRPSQEQKGLDERTLIASQRPFHPW*
Ga0157377_103975971	3300014745	Miscanthus Rhizosphere	DIVRRVVYLLRADKSPRLTRRPSQEQKGLDERARMASQRSSEAW*
Ga0137403_109403661	3300015264	Vadose Zone Soil	VYLLLADKSHRNTHRLSQGQKGLDERALMASQRPSEPW*
Ga0182032_100814011	3300016357	Soil	TWYWVVYLHHADKSHRLTPRLSQEQKGLDERTLMASQRPSEPW
Ga0163161_110369441	3300017792	Switchgrass Rhizosphere	NSGALKAAVYLHTADKYRRFTRRPPQEQKGLDERARMVS
Ga0190269_115907062	3300018465	Soil	VSASIDELVVSLEPADNSPRLTRRLSQGLKVLDELALMTSQQPSEPW
Ga0179596_102067811	3300021086	Vadose Zone Soil	APSVVYLAAADKDRGLTRRPLQEQKGLDKRTLIASQQPFHPW
Ga0207684_101924522	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SLHLVVYLPNADKYRGLTRRPSEGQKGLDERALMASQRPFHPW
Ga0207689_107651801	3300025942	Miscanthus Rhizosphere	VVYLLRADKSPRLTRRPSQEQKGLGERARMASQRSSEAW
Ga0257170_10196582	3300026351	Soil	STVVYLPNADKYRGLTRRPSKGQKGLDERALMASQRPFHPW
Ga0209157_12479452	3300026537	Soil	GKSVVYLSPADNSPRLTRRLSQGLKVLDEWALMTSQQLSEPW
Ga0209879_10830822	3300027056	Groundwater Sand	HRAGSKEVVYLPTADKYPRLTRRPSQGHKGIDERVLMAS
Ga0209843_10271861	3300027511	Groundwater Sand	VVYLAAADKYRRLTHRLSQGQKGLDERALMVSQRLSDP
Ga0209843_10359581	3300027511	Groundwater Sand	MVKEVVYLHPADKSPRLTRRLSQGQKGLEERALMASQRPSH
Ga0209799_10394751	3300027654	Tropical Forest Soil	NRTAVYLPTADKYRRLTRRLSQGQKGLEERALMASQQPSEPW
Ga0209382_101098218	3300027909	Populus Rhizosphere	MCKESLCSAVYLSPADKYHRLTRRLSQGQKGLDERALMAFQRPSEPW
Ga0137415_103089561	3300028536	Vadose Zone Soil	GLGAVYLAAAAKYRRLTHRLSQGHKGLDERTLMASQQPFHPW
Ga0137415_106175822	3300028536	Vadose Zone Soil	LPAAEPVVYLLAADKYRRLTRRLSQEQKGLDERALMASQRPSHPW
Ga0307305_105413141	3300028807	Soil	VVYLPNADKYRGLTHRPLQEQKGLDERALMASQRPSAP
Ga0307278_101218612	3300028878	Soil	MSELHDFNQRVVYLSPADKYHRFTRRLSKGQKVLQERALLASQRPSEPW
Ga0307473_109234531	3300031820	Hardwood Forest Soil	HWVVYLPNADKYRGLTRRPLQEHKGLDERALMASQRPSAPW
Ga0306926_102255513	3300031954	Soil	MEFQGAERWVVYLHPADKYFRLTHRPSQEQKGLDERALMASQRPSPPW
Ga0306924_113587152	3300032076	Soil	PQQVVYLSPADKYHRLTRRLSQEQKGLEERALMASQRPSPPW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters