NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105681

Metagenome Family F105681

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105681
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence MADDKEPFEALTATAEQTPEQITKQTQGAMENYFGWLQKTMSALPWSNTN
Number of Associated Samples 81
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 89.00 %
% of genes near scaffold ends (potentially truncated) 91.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84
1AF_2010_repII_A10DRAFT_10238323
2Ga0066684_107641652
3Ga0066671_107793221
4Ga0070710_103776271
5Ga0070699_1014782811
6Ga0066903_1087067181
7Ga0066903_1088019382
8Ga0066903_1090297011
9Ga0070717_107311012
10Ga0075023_1001952671
11Ga0075024_1005561792
12Ga0075014_1001674982
13Ga0079220_107303432
14Ga0079219_108369172
15Ga0066709_1042767951
16Ga0126373_117905642
17Ga0126370_116100122
18Ga0126376_112202792
19Ga0126372_109735351
20Ga0126378_111498663
21Ga0126378_112480371
22Ga0126377_125050452
23Ga0126381_1018131533
24Ga0126383_110043761
25Ga0126383_114927663
26Ga0124850_11438602
27Ga0137776_14306701
28Ga0137776_18889592
29Ga0137388_106290191
30Ga0137365_112082371
31Ga0137360_116849261
32Ga0126375_103432901
33Ga0182036_112940501
34Ga0182036_114892013
35Ga0182041_111134701
36Ga0182041_114860021
37Ga0182035_1000186816
38Ga0182035_101504211
39Ga0182035_109609313
40Ga0182035_110136473
41Ga0182032_101337313
42Ga0182034_102901711
43Ga0182034_105011981
44Ga0182034_117145151
45Ga0182040_109788322
46Ga0182037_117410682
47Ga0182039_102627891
48Ga0182039_121743071
49Ga0187802_101981442
50Ga0187820_10568913
51Ga0187801_102378442
52Ga0187803_102406641
53Ga0187817_105849421
54Ga0187779_103349473
55Ga0187783_105767322
56Ga0187823_101074381
57Ga0210406_109629131
58Ga0210408_113324342
59Ga0209073_103643981
60Ga0209177_104627382
61Ga0209583_102317003
62Ga0209698_110580102
63Ga0170834_1125625763
64Ga0170820_171424772
65Ga0170819_162760501
66Ga0318534_102370342
67Ga0318538_100307815
68Ga0318542_102886741
69Ga0318560_106636751
70Ga0310686_1125199851
71Ga0318500_100006271
72Ga0306918_100594944
73Ga0306918_113076742
74Ga0318502_104048661
75Ga0318494_101434333
76Ga0318537_100049641
77Ga0318554_107904191
78Ga0318546_111431631
79Ga0318543_100031181
80Ga0318568_107641311
81Ga0310917_106043351
82Ga0310917_108117111
83Ga0310917_110857882
84Ga0318527_103984611
85Ga0306919_110817852
86Ga0306925_101997245
87Ga0306923_122802161
88Ga0306921_106199142
89Ga0310910_113588102
90Ga0306926_122448942
91Ga0318530_100013541
92Ga0306922_101194485
93Ga0306922_114991301
94Ga0310911_101267291
95Ga0310911_108276302
96Ga0318532_102678611
97Ga0318505_105651092
98Ga0318504_105028971
99Ga0306920_1017581861
100Ga0306920_1030990602
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.85%    β-sheet: 0.00%    Coil/Unstructured: 46.15%
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Variant

5101520253035404550MADDKEPFEALTATAEQTPEQITKQTQGAMENYFGWLQKTMSALPWSNTNSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
46.0%54.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
6.0%5.0%3.0%11.0%4.0%25.0%4.0%27.0%4.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A10DRAFT_102383233300000816Forest SoilMTDKEPFESLTAAQTAEQMTKQTQGAMENYFGWLQMTMPTFPWANTNL
Ga0066684_1076416523300005179SoilMTDKERFESLTATAAQSAEQMTKQTQVAMENYFGWFQNAMSAIPWSNTNLNRILL
Ga0066671_1077932213300005184SoilMADKESFESLTTTARQTAEQFTKQAQGPMENYLGWLQTSMAALPWSNTNLNRILL
Ga0070710_1037762713300005437Corn, Switchgrass And Miscanthus RhizosphereMADDKEPFEASTATAEQTAEQITKQTQGAMENFFGWLQKTMSALPWSNTNLNRILLS
Ga0070699_10147828113300005518Corn, Switchgrass And Miscanthus RhizosphereMAEDESFEALTATDEQTAEQITKQTQGAMENYFGWLQKTMSALPWSDTNLDRILLGYATQNV
Ga0066903_10870671813300005764Tropical Forest SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNL
Ga0066903_10880193823300005764Tropical Forest SoilVAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQTTMSTL
Ga0066903_10902970113300005764Tropical Forest SoilMAKDKELFEGLTTAAQQTAKQITEQTQGAMEDYFGWLQTTMSAFPWSNTNLNRILLSHATQNV
Ga0070717_1073110123300006028Corn, Switchgrass And Miscanthus RhizosphereMAKDKEPLEAFTATAAQTAEQMTKQTQDYFGWLQNTMSTF
Ga0075023_10019526713300006041WatershedsMAKDQDPLEAFTVTAAQTAEQTTKQTQGAMENYFGWL
Ga0075024_10055617923300006047WatershedsMADKEPSLTGVARQTAEQITQQTTHAMETYFSWLPNVMSAFPWS
Ga0075014_10016749823300006174WatershedsMAEDKEPFEALRATAEQSAEQITKQTQGAMENYFGWLHRRRVLGE*
Ga0079220_1073034323300006806Agricultural SoilMAQDEKPSEARKATGERTAQEIVKQAQGAMENYFGWLQKSMSTLPWSNTNLNR
Ga0079219_1083691723300006954Agricultural SoilMAQDEKPSEARKATGERTAQEIVKQAQGAMENYFGWLQKSMSTLPWSNTNLNRVLLS
Ga0066709_10427679513300009137Grasslands SoilMAEDKEPFEALTATEEQTAEQITKQITKQTQGAMENYFDWLQKT
Ga0126373_1179056423300010048Tropical Forest SoilVAEDKVPFEALTATEEQAIEQITKQTQGAMENYFGCLQKAMSALPWSNTNLNRVLL
Ga0126370_1161001223300010358Tropical Forest SoilMAKDKGPFGGLTTTAAQTAEQMTKQTQGAMENYFGWLQTTTSALPWSNTNLNR
Ga0126376_1122027923300010359Tropical Forest SoilMTDKEPFESLTAAQTAEQMTKQTQGAMENYFGSLQTTMSVFPWSNTNLNRILLT*
Ga0126372_1097353513300010360Tropical Forest SoilMAKDKEPFEALTATEEQTAEQITRQTQGAMENYFGWLQKTMSAL
Ga0126378_1114986633300010361Tropical Forest SoilMAADKEPFKALPPTEEQTAEQITKQTQGAMENYFDWLQKTRFLGVTRI*
Ga0126378_1124803713300010361Tropical Forest SoilDKGPFEGLTATAAQTAEQMTKQTQGAMENYFGWLQTTMSAFPWSNTNLNRVR*
Ga0126377_1250504523300010362Tropical Forest SoilMAKDKEPFESLTATAAQTAERMTKQTQGAMENYLGWLPTTMSALPWSNTNLNR
Ga0126381_10181315333300010376Tropical Forest SoilMAKDKEPFEALTASAAQTAEQITKQTQGAMENYFGWLQKTM
Ga0126383_1100437613300010398Tropical Forest SoilMAKDKEPFESLTATAAQTAERMTKQTQGAMENYFG
Ga0126383_1149276633300010398Tropical Forest SoilMTDKEPFESLTATAAKTAEQITKQTQGAMENYFGWLQM
Ga0124850_114386023300010863Tropical Forest SoilMAKDKEPVEILTAGAEQTAEQTTKQTQDYFGWLQQKTMSVPVTRI*
Ga0137776_143067013300010937SedimentMANDKDHPLEPFSFNATKTAEQMTKQTQGAMDNYFGWLQT
Ga0137776_188895923300010937SedimentMTKEDPLEPFSFNATKTAEQMTKQTQGAMDNYFGWLQT
Ga0137388_1062901913300012189Vadose Zone SoilMADDKEPFEALTATAEQTPEQITKQTQGAMENYFGWLQKTMSALPWSNTN
Ga0137365_1120823713300012201Vadose Zone SoilMPAMADKEPFESLTTTAAQSVDQITNQTQGAMENYFGWLQTTTSALPWSNTNLNRILLSN
Ga0137360_1168492613300012361Vadose Zone SoilMAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQKTMSALPWSNTNLIEYF*
Ga0126375_1034329013300012948Tropical Forest SoilMAKDRESIESLTATAAQTAELITKQTQGAMENYFG
Ga0182036_1129405013300016270SoilMAKDKDPLEAFTVTAGQTAEQMMKQTQAAIENYFGWLQMTMSTFPWSNT
Ga0182036_1148920133300016270SoilMAKDKDPLEAFTATAAQMTKQTQVAMENYFGWLQKA
Ga0182041_1111347013300016294SoilMANDKEPFEALTATAEQTAEQITKQTQGAMEKYFRWLHNTMSAFPWSSTNLNRIL
Ga0182041_1148600213300016294SoilMAKDKGPFEALTATATQTAEQITKQTQGAMESYFGWLQKAMSTYPWS
Ga0182035_10001868163300016341SoilMAKGQDPLEALTATAAQTAQQITKQTQGAMESYFGWLQ
Ga0182035_1015042113300016341SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLNRV
Ga0182035_1096093133300016341SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWS
Ga0182035_1101364733300016341SoilMANDKEPFEALTATAEQTAEQITKQTQGAMEKYFRWLHNTMSAFPWSSTNLNRILLSNA
Ga0182032_1013373133300016357SoilMAKDKEPLEAFTAAAAQMTKQTQGAMENYFGWLQMTMPTFPWSNTNLN
Ga0182034_1029017113300016371SoilMAKDKGPFEDLTTTAAQTAEQMTKQTQGVMENYFGWLQTTTSALPWS
Ga0182034_1050119813300016371SoilMAKDREPVEILTASAEQTAEQITRQTQDYFGWLQKTMSVPWSHTNLNR
Ga0182034_1171451513300016371SoilMAKDKEPFEALAATAERTAEQITKQTQGPMEYYFGWLQNAMSALPWSNTNLNRVLLRNATQN
Ga0182040_1097883223300016387SoilMAKDTEPLEAFTTSAAQTAEQLTKQTQGAMENYVAWLQTTMSVLPWS
Ga0182037_1174106823300016404SoilMAKDKEPLQVFIATAAQTAEQMRTQTQGAMENYFGW
Ga0182039_1026278913300016422SoilMRKDKESIESLTANAEQTAEQITKQTQDYFGWLQKTMSVPWSHTNLNRILLN
Ga0182039_1217430713300016422SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILLSHATQN
Ga0187802_1019814423300017822Freshwater SedimentMKSTAAVLEALTATAEQSAEQITKQTQGAMENYFGWLHRRRVLGE
Ga0187820_105689133300017924Freshwater SedimentMAEDKECFEALTATAEQTAEQITKQTQGAMENYFGWLQKTIS
Ga0187801_1023784423300017933Freshwater SedimentMAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQKTMSALPWTNTNLDRILLSY
Ga0187803_1024066413300017934Freshwater SedimentMAKDKEPFEALTGTAQETAKQITEQTQGAMENYFGWLQTTMSSTFF
Ga0187817_1058494213300017955Freshwater SedimentLHHHTYEDTAMAEDQEPFEALTATAEQSAEQITKQTQRAMENYFGWLHRRRVLGE
Ga0187779_1033494733300017959Tropical PeatlandMAKDKEPFEGLTTSAQQTAKQITEQTQGAMENYFGGLQTTMSVFPWS
Ga0187783_1057673223300017970Tropical PeatlandMNLNENTAMTKDEEPLEAFVATAAQLRAQMQGAMENYFGWLQTTMST
Ga0187823_1010743813300017993Freshwater SedimentMAEDKECFEALTATAEQTAEQITKQTQGAMENYFGWLQKTISALP
Ga0210406_1096291313300021168SoilMAEDGPFEALRATEEQTAEQITKQTQGAMENYFGWLQKSMSALPWTNKNLDRILLGYAT
Ga0210408_1133243423300021178SoilMAKDEEPFESVTVTAAQTAKQITEQTQEVMENYFGWLQKTMPALPWSNTNLNRILLNH
Ga0209073_1036439813300027765Agricultural SoilMAEEKEPFEALTTTAAQTAEQITKQTQGAMENYFGWLQNTMSTLP
Ga0209177_1046273823300027775Agricultural SoilMAKDKTPLEAFTATTALTAEQMTKQTQDAMENYFGWLQKAM
Ga0209583_1023170033300027910WatershedsMAKDQDPLEAFTVTAAQTAEQTTKQTQGAMENYFGWLQKSMSTFPWSNTN
Ga0209698_1105801023300027911WatershedsMAEDKEPFEALTATEEQTAEQITKQTKGAMENYFGWLQSCDVDDAKF
Ga0170834_11256257633300031057Forest SoilMAKDKEPLEAFTATAAQTAEQMTKQTQDYFGWLQNTMSTFPWSNTNLNRILLSNATKN
Ga0170820_1714247723300031446Forest SoilMTEDKERFEALTATAEQTAEQITKQTQGAMENYFCWLQKTMSALPWRNTNLNRILLSNATQNV
Ga0170819_1627605013300031469Forest SoilMADDKEPFEALTATAEQTAEQITKQTQGAMENYFGWL
Ga0318534_1023703423300031544SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWPQK
Ga0318538_1003078153300031546SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLHRILLNY
Ga0318542_1028867413300031668SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPW
Ga0318560_1066367513300031682SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLN
Ga0310686_11251998513300031708SoilMAKDKEPFEALTGMAELTAEQIMKQTQGAMENYFGWLQTTMSAFPWSN
Ga0318500_1000062713300031724SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWSNTNLNRILLSN
Ga0306918_1005949443300031744SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSATSLE
Ga0306918_1130767423300031744SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQT
Ga0318502_1040486613300031747SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLNRVLLRNATQNVT
Ga0318494_1014343333300031751SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLHRILLNCAT
Ga0318537_1000496413300031763SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWS
Ga0318554_1079041913300031765SoilMAKDREPVEILTASAEQTAEQITKQTQDYFGWLQKTMSVP
Ga0318546_1114316313300031771SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILLTHAT
Ga0318543_1000311813300031777SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSA
Ga0318568_1076413113300031819SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLH
Ga0310917_1060433513300031833SoilMAKDKDPLEAFTVTAGQTAVQMMKQTLAAMENYFGWLQMTMS
Ga0310917_1081171113300031833SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQK
Ga0310917_1108578823300031833SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILL
Ga0318527_1039846113300031859SoilDTAMAKDKEPFEALTAPEEQTAEEITKQTQGAMENYFGWLQKTMSHFHGVTRI
Ga0306919_1108178523300031879SoilMANDKEPFEALTATAEQITKQTQGAMENYFRWLQNTMSAFPWSSTNLNRILL
Ga0306925_1019972453300031890SoilMAKDKEPFEALTATEEQTAEQIMKQTQGAMENYFGWLQKTMSHFHGVTRI
Ga0306923_1228021613300031910SoilMAKDKEPFEGLTTAAQQTAKQITEQTQVAMENYFG
Ga0306921_1061991423300031912SoilMAKDKEPFEALTATEEQTAEQIMKQTQGAMENYFGWLQKTMSHF
Ga0310910_1135881023300031946SoilMAKDKGPFEALTATATQTAEQITKQTQGAMENYFGWLQ
Ga0306926_1224489423300031954SoilMAKDKGPFEALTATATQTAEQITKQTQGAMENYFGWLQKTMSTFPWSNTNLNRILLSNA
Ga0318530_1000135413300031959SoilMPKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWSNTNLN
Ga0306922_1011944853300032001SoilKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSATSLE
Ga0306922_1149913013300032001SoilMANDKEPFEALTATAEQTAEQITKQTQGAMENYFRWLHNTMSAFPWSSTNLN
Ga0310911_1012672913300032035SoilMRKDKESIESLTANAEQTAEQITKQTQDYFGWLQKTMSVPWS
Ga0310911_1082763023300032035SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSA
Ga0318532_1026786113300032051SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNT
Ga0318505_1056510923300032060SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSA
Ga0318504_1050289713300032063SoilMAKDQDPLEALTATAAQTAQQITKQTQGAMESYFGWLQKAMSTYPWSNTN
Ga0306920_10175818613300032261SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNA
Ga0306920_10309906023300032261SoilMANDKEPFEALTATAEQITKQTQGAMENYFRWLQNTMSAFPWSSTNLNRI


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