NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105631

Metagenome / Metatranscriptome Family F105631

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105631
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 57 residues
Representative Sequence MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRR
Number of Associated Samples 76
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 1.00 %
% of genes from short scaffolds (< 2000 bps) 2.00 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(38.000 % of family members)
Environment Ontology (ENVO) Unclassified
(41.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1F14TC_1072339731
2JGI12627J18819_100667451
3Ga0066388_1046923661
4Ga0070708_1003738223
5Ga0070707_1002656242
6Ga0070762_105835371
7Ga0070762_106612291
8Ga0066903_1040877641
9Ga0070712_1007856711
10Ga0075436_1008432781
11Ga0099791_100310644
12Ga0099793_102367762
13Ga0099794_105299561
14Ga0126376_107422802
15Ga0126378_120548351
16Ga0126379_109966011
17Ga0126381_1006580731
18Ga0126381_1008337393
19Ga0126381_1024759791
20Ga0137391_100578834
21Ga0137363_103168192
22Ga0137363_108176302
23Ga0137362_101831033
24Ga0137362_102026631
25Ga0137360_100431935
26Ga0137360_102677442
27Ga0137361_100030414
28Ga0137390_102165972
29Ga0137358_100461926
30Ga0137358_111141482
31Ga0137407_122469272
32Ga0182036_113172382
33Ga0182041_100196358
34Ga0182041_107263832
35Ga0182035_100487717
36Ga0182035_118479332
37Ga0182037_117607712
38Ga0187804_100811341
39Ga0179592_101338002
40Ga0210407_103712163
41Ga0210407_107491471
42Ga0210407_112653521
43Ga0210399_100697081
44Ga0210401_108192332
45Ga0210401_109581672
46Ga0210404_107088802
47Ga0210406_101493211
48Ga0210406_102478003
49Ga0210400_1000038248
50Ga0210400_101794122
51Ga0210400_107487962
52Ga0210400_116154192
53Ga0210405_103195251
54Ga0210405_103340791
55Ga0210388_107849001
56Ga0210387_106751201
57Ga0210387_112588892
58Ga0210387_113185831
59Ga0210383_107844051
60Ga0210383_110321812
61Ga0210394_113832951
62Ga0210391_113096521
63Ga0210410_104585451
64Ga0210409_103180301
65Ga0210409_107642572
66Ga0207684_107432701
67Ga0207693_101018984
68Ga0207665_100741021
69Ga0209240_10049747
70Ga0257179_10369811
71Ga0209730_10321991
72Ga0208092_1118081
73Ga0209731_10467431
74Ga0209523_10132791
75Ga0137415_101208272
76Ga0222749_106882371
77Ga0318561_106791071
78Ga0307469_105343591
79Ga0307469_115813771
80Ga0307468_1022739972
81Ga0307477_111207761
82Ga0307475_105095121
83Ga0318546_110251062
84Ga0318548_105629892
85Ga0318568_108408902
86Ga0307473_115592581
87Ga0318567_105778431
88Ga0318511_104665982
89Ga0306923_123199452
90Ga0310912_100037331
91Ga0310910_113855212
92Ga0310909_105105981
93Ga0306926_114740221
94Ga0307479_101898693
95Ga0318506_105011501
96Ga0307471_1015434191
97Ga0307471_1020629662
98Ga0307472_1000609421
99Ga0307472_1008391341
100Ga0306920_1022884651
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 88.68%    β-sheet: 0.00%    Coil/Unstructured: 11.32%
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Variant

5101520253035404550MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
5.0%95.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
17.0%6.0%38.0%9.0%11.0%5.0%6.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10723397313300000559SoilVTTSNARSAFLRSYHLPAILRQYPRLIRAMQRVANLGHMEAALCIRELKAGRRWSGFAVDRY
JGI12627J18819_1006674513300001867Forest SoilMTTANARRAFVRSYHLPTILTHYPRLVRAMRGVVALNGVEAAICIRDLKAGRRWSSEAVNRYGGTH
Ga0066388_10469236613300005332Tropical Forest SoilMTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWS
Ga0070708_10037382233300005445Corn, Switchgrass And Miscanthus RhizosphereMTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRYGGT
Ga0070707_10026562423300005468Corn, Switchgrass And Miscanthus RhizosphereMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDVKAGRRWS
Ga0070762_1058353713300005602SoilMTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWGTEAVN
Ga0070762_1066122913300005602SoilMTTNDARAAFLRTYHIPAILVHYPRLVRAMQWVAGLNRAEAAACIRDLKAGH
Ga0066903_10408776413300005764Tropical Forest SoilSARCAFLRSYQILTVLTHDPRLVRSMRGIAMLSGTEAAICIRDFKAGRRWSIEAEGKAT*
Ga0070712_10078567113300006175Corn, Switchgrass And Miscanthus RhizosphereMTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGR
Ga0075436_10084327813300006914Populus RhizosphereMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRW
Ga0099791_1003106443300007255Vadose Zone SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0099793_1023677623300007258Vadose Zone SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSK*
Ga0099794_1052995613300007265Vadose Zone SoilNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLDGIEAAACIRDLKAGRRWSK*
Ga0126376_1074228023300010359Tropical Forest SoilMTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRD
Ga0126378_1205483513300010361Tropical Forest SoilMTTKHARRAFLRSYHVPAILINYPRLVRAMQSVAMLSGIEAASCIRDLK
Ga0126379_1099660113300010366Tropical Forest SoilMTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRR
Ga0126381_10065807313300010376Tropical Forest SoilMTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLK
Ga0126381_10083373933300010376Tropical Forest SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGT
Ga0126381_10247597913300010376Tropical Forest SoilMTTESARCAFLRSYQILTVLTHDPRLVRSMRGIAMLSGTEAAICIRDFKAGRRWSIEAKGKAT*
Ga0137391_1005788343300011270Vadose Zone SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137363_1031681923300012202Vadose Zone SoilMTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSE
Ga0137363_1081763023300012202Vadose Zone SoilMTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMMNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137362_1018310333300012205Vadose Zone SoilMTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRSSSEALNRYGGTHKGCD*
Ga0137362_1020266313300012205Vadose Zone SoilMTASNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSEA
Ga0137360_1004319353300012361Vadose Zone SoilMTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137360_1026774423300012361Vadose Zone SoilMTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLK
Ga0137361_1000304143300012362Vadose Zone SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRSSSEALNRYGGTHKGCD*
Ga0137390_1021659723300012363Vadose Zone SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLDGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137358_1004619263300012582Vadose Zone SoilMTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSK*
Ga0137358_1111414823300012582Vadose Zone SoilMTTNNVRSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSGE
Ga0137407_1224692723300012930Vadose Zone SoilMTTRGARGAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRWSS
Ga0182036_1131723823300016270SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICI
Ga0182041_1001963583300016294SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRD
Ga0182041_1072638323300016294SoilMTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRD
Ga0182035_1004877173300016341SoilMTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAI
Ga0182035_1184793323300016341SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTE
Ga0182037_1176077123300016404SoilMTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVN
Ga0187804_1008113413300018006Freshwater SedimentMTTNGARSAFLRSYHIPAILLHYPRLVRAMREIATLNSVEAAACIRDFKAGRRWSGQ
Ga0179592_1013380023300020199Vadose Zone SoilMTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSGEAVNRY
Ga0210407_1037121633300020579SoilMTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEITAATCIRDLKAGRRWSSGPVNRYGG
Ga0210407_1074914713300020579SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDL
Ga0210407_1126535213300020579SoilMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSS
Ga0210399_1006970813300020581SoilMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDL
Ga0210401_1081923323300020583SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSGDAVDRCGGTH
Ga0210401_1095816723300020583SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRG
Ga0210404_1070888023300021088SoilMTTNNARCAFLRSYHVPSILLHYPRLVRAMRGIAGLNGMEAAKCIRDFKAGRRWSSEAVN
Ga0210406_1014932113300021168SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLATVDEMTAATCIRDLKAGR
Ga0210406_1024780033300021168SoilMTRKGARNAFLRSYHMPSILLHYPRLVRSMRRLAILDEMTAAPCIRD
Ga0210400_10000382483300021170SoilMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRHWSSDAVDRCG
Ga0210400_1017941223300021170SoilMTTKGARSAFLRSYHIPSILLHYPRLLRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRFG
Ga0210400_1074879623300021170SoilMTTNSARSAFLRSYHLPAILVYYPRLVRAMQGIAMLSGIEAAACIRDFKAGQRW
Ga0210400_1161541923300021170SoilMTRKGARNAFLRSYHIPSILLHYPHLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRYGGTHKVAT
Ga0210405_1031952513300021171SoilMTTKGARSAFLRSYHIPSILLRYPRLVHSMRRLAVLDEMTAATCIRDLKAGRRWSSEAVNRY
Ga0210405_1033407913300021171SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDELAAATCIRDLKARRRWSSDAVDRYGGTR
Ga0210388_1078490013300021181SoilMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRCWSSD
Ga0210387_1067512013300021405SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAAACIRDLTARRRWSS
Ga0210387_1125888923300021405SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKA
Ga0210387_1131858313300021405SoilMTTNNAHCAFLRSYHLPAILLHYPRLVRAMQRIAMLNGTEAAACIRDLKAGRRWSSGPVN
Ga0210383_1078440513300021407SoilMTTRGARSAFLRSYHVPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAG
Ga0210383_1103218123300021407SoilMTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEITAATCIRDLKAGR
Ga0210394_1138329513300021420SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDL
Ga0210391_1130965213300021433SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSS
Ga0210410_1045854513300021479SoilMTGNNARSAFLRSYHIPAILLHYPRLVRAMRGIASLNGMEAAACI
Ga0210409_1031803013300021559SoilMTRKGARNAFLRSYHIPSILLHYPRLVRSMMRLAILDEMTAVTCIRDLKAGRR
Ga0210409_1076425723300021559SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRYGGTHK
Ga0207684_1074327013300025910Corn, Switchgrass And Miscanthus RhizosphereMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTATTCIRDLKAGR
Ga0207693_1010189843300025915Corn, Switchgrass And Miscanthus RhizosphereMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDLKAGRRWSSRQSLRRNS
Ga0207665_1007410213300025939Corn, Switchgrass And Miscanthus RhizosphereMTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDLKA
Ga0209240_100497473300026304Grasslands SoilMTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD
Ga0257179_103698113300026371SoilMTASNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSEAVNRYGG
Ga0209730_103219913300027034Forest SoilMTTNNARVAFLRSYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRW
Ga0208092_11180813300027074Forest SoilMTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRR
Ga0209731_104674313300027326Forest SoilMTTNNARVAFLRYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRR
Ga0209523_101327913300027548Forest SoilMTTNNARVAFLRSYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRWSSE
Ga0137415_1012082723300028536Vadose Zone SoilMTTNNARRAFLRSYHLPAILLHYPRLVRAMQGIAMLNGIQAAACIRDLKAGRRWSSEAVNRYGGTHKGCD
Ga0222749_1068823713300029636SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRW
Ga0318561_1067910713300031679SoilMTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRDLKAGRRWSVEAVNQYGGTR
Ga0307469_1053435913300031720Hardwood Forest SoilMATKSARSAFLRCYHIPSILLHYPRLVRSMRRVAILDEMTAATCIRDLKARR
Ga0307469_1158137713300031720Hardwood Forest SoilMTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKA
Ga0307468_10227399723300031740Hardwood Forest SoilMTRKGARSAFLRCYHIPSILLHYPRLVRSMRRLAILDERTAATCIRDLKAGRRWSSEAVNRYGGTH
Ga0307477_1112077613300031753Hardwood Forest SoilMTTKGVRSAFLRSYHIPSILLHYPRLVRSMRRLAILDEVTAASCIRDLKAGRRWSSEAVNRYGGTHK
Ga0307475_1050951213300031754Hardwood Forest SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVD
Ga0318546_1102510623300031771SoilMTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAG
Ga0318548_1056298923300031793SoilMTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEA
Ga0318568_1084089023300031819SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMQGIALLSGTEAAICIRDLKAGRRWSIEAVN
Ga0307473_1155925813300031820Hardwood Forest SoilMTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACISDLKAGRRWGT
Ga0318567_1057784313300031821SoilMTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVE
Ga0318511_1046659823300031845SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRR
Ga0306923_1231994523300031910SoilMTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVNEYG
Ga0310912_1000373313300031941SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWS
Ga0310910_1138552123300031946SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAG
Ga0310909_1051059813300031947SoilMTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVNEYGGTRK
Ga0306926_1147402213300031954SoilMTTNGARCAFLRSYQILSILTHYPRLVRAMQGIALLSGTEAAVCIRDFK
Ga0307479_1018986933300031962Hardwood Forest SoilMTTNNARSAFLRSYHVLAILLHYPRLVRAMRGIAGLNGMEAAKCIRDSKAGRRWS
Ga0318506_1050115013300032052SoilMTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRDLK
Ga0307471_10154341913300032180Hardwood Forest SoilMTTNNARSAFLRSYYLPAILLHYPRLVRAMQGIAMLNGMEAATCIRDLKAGRRWSSEAVNRYGGTHKVA
Ga0307471_10206296623300032180Hardwood Forest SoilMTTNNARSAFLRSYHVPAILLHYPRLVRAMRGIAGLNGMEAAKCIRDLKAGRRWSSDAVNRY
Ga0307472_10006094213300032205Hardwood Forest SoilMTRKGARNAFQRSYHIPSILLHYPHLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRY
Ga0307472_10083913413300032205Hardwood Forest SoilMTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRY
Ga0306920_10228846513300032261SoilMTTNGARCAFLRSYQILSILTHYPRLVRAMQGIALLSGTEAAVCIRDFKAGRRWSVKA


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