NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105546

Metagenome / Metatranscriptome Family F105546

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105546
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence LIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 88.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.000 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1JGIcombinedJ51221_103951702
2Ga0070711_1006446841
3Ga0066670_100976222
4Ga0070762_109595172
5Ga0070763_100698221
6Ga0075272_10976172
7Ga0070765_1017314721
8Ga0079222_102754681
9Ga0079222_113538992
10Ga0079222_122660912
11Ga0079220_120749551
12Ga0075426_105296682
13Ga0105241_109199532
14Ga0116214_11969962
15Ga0116214_14461651
16Ga0116224_102206962
17Ga0116217_102300142
18Ga0116223_100279673
19Ga0127503_104869841
20Ga0127503_105104392
21Ga0131853_113809662
22Ga0074044_106043831
23Ga0126378_105657871
24Ga0134128_122135231
25Ga0126350_105537332
26Ga0137363_115762951
27Ga0137378_118583512
28Ga0137384_100500201
29Ga0182039_109124722
30Ga0187802_103068852
31Ga0187806_10058623
32Ga0187809_100767941
33Ga0187808_105278822
34Ga0187847_106267531
35Ga0187779_104927092
36Ga0187781_114261081
37Ga0187855_104740202
38Ga0187887_104268711
39Ga0187766_107439411
40Ga0187772_106365612
41Ga0210395_100599891
42Ga0210395_109223731
43Ga0210395_112170591
44Ga0210408_109712702
45Ga0210396_117651642
46Ga0210393_109586791
47Ga0210393_111039332
48Ga0210397_108594681
49Ga0210390_102964361
50Ga0187846_101925081
51Ga0210402_112865371
52Ga0228598_11282752
53Ga0257162_10460822
54Ga0209580_104153892
55Ga0209517_100191701
56Ga0209693_100420571
57Ga0209006_111853341
58Ga0302226_101340661
59Ga0302229_102374481
60Ga0311340_102352072
61Ga0311371_114968202
62Ga0311355_108184691
63Ga0302325_120060912
64Ga0302325_127439662
65Ga0318574_104957971
66Ga0318572_102649561
67Ga0318572_103396832
68Ga0310686_1002777562
69Ga0307474_116186111
70Ga0318493_101356132
71Ga0306918_115028912
72Ga0318492_100190461
73Ga0318492_102653682
74Ga0318494_102276461
75Ga0318521_100271711
76Ga0318543_103129282
77Ga0318498_100143551
78Ga0318547_100318212
79Ga0318552_100601131
80Ga0318552_106057351
81Ga0318523_104059542
82Ga0318568_101699122
83Ga0318567_104757381
84Ga0318564_104454091
85Ga0318511_100770931
86Ga0318551_105490471
87Ga0318520_104004501
88Ga0306923_122208832
89Ga0308174_101284801
90Ga0306926_125174401
91Ga0306926_127901612
92Ga0318570_105175162
93Ga0318510_101458061
94Ga0318553_100077044
95Ga0310890_104932242
96Ga0311301_108555322
97Ga0311301_126874891
98Ga0307472_1025914452
99Ga0335078_121196921
100Ga0335071_111847441
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 48.61%    β-sheet: 0.00%    Coil/Unstructured: 51.39%
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510152025303540LIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESAExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
7.0%93.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Rice Paddy Soil
Tropical Peatland
Bog Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Biofilm
Termite Gut
Populus Rhizosphere
Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
3.0%4.0%3.0%8.0%4.0%34.0%5.0%4.0%4.0%7.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1039517023300003505Forest SoilVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA*
Ga0070711_10064468413300005439Corn, Switchgrass And Miscanthus RhizospherePPVLIQLGWSQILPLAVAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0066670_1009762223300005560SoilPVPPVLIQFGWSQTLTLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT*
Ga0070762_1095951723300005602SoilPVTIQFDWAQTLPLALAVATLPVLVAAAVIARRSDPAAELRTAEAA*
Ga0070763_1006982213300005610SoilPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA*
Ga0075272_109761723300005900Rice Paddy SoilRIDLAWPQTLTLAVVVAVLPVLAVALTVARRPDPAAQLRAAESG*
Ga0070765_10173147213300006176SoilVPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRATESA*
Ga0079222_1027546813300006755Agricultural SoilTAATRPVPPVLIQFGWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA*
Ga0079222_1135389923300006755Agricultural SoilVLIPFGWTQTLLLALAVAVLPVLASALTLARPPDSAAELTADEAA*
Ga0079222_1226609123300006755Agricultural SoilVLIQFGWAQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA*
Ga0079220_1207495513300006806Agricultural SoilPVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0075426_1052966823300006903Populus RhizospherePPVLIQLGWSQILLLALAVAVLPVLAAGLTIARRPDAAAELRAAEST*
Ga0105241_1091995323300009174Corn RhizosphereLTSAATAPVPPVLIQLGWSQILALALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0116214_119699623300009520Peatlands SoilPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116214_144616513300009520Peatlands SoilTRPVPPVLIQFAWAQTLALALAVAVLPVLAASLTIARRPDPAAELRAAEAA*
Ga0116224_1022069623300009683Peatlands SoilVPAITLTSSATVPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116217_1023001423300009700Peatlands SoilWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116223_1002796733300009839Peatlands SoilPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0127503_1048698413300010154SoilVPAVLIKFDWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT*
Ga0127503_1051043923300010154SoilVPPVLIQFGWSQALLLALAVAVLPVLAAALTLARRPDAAAELRAAESA*
Ga0131853_1138096623300010162Termite GutQTLPLALAVATLPVLVAEAVVARRPDPAAELRTAEAA*
Ga0074044_1060438313300010343Bog Forest SoilTARSPVPPVIIQFDWAQTLPLALAVATLPVLVAAAVIARRPDPAADLRTAEAA*
Ga0126378_1056578713300010361Tropical Forest SoilIEFGWAQTLALALAVAVLPVLAAALTVARRPDAAAELRTAEAT*
Ga0134128_1221352313300010373Terrestrial SoilAPVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0126350_1055373323300010880Boreal Forest SoilLVPAVTLTAVATTPVPPVIIQFGWLQTLALALAVAVLPVLAAALTIIRRPDAAAELRAAESA*
Ga0137363_1157629513300012202Vadose Zone SoilKPVPPVLIEFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT*
Ga0137378_1185835123300012210Vadose Zone SoilVLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT*
Ga0137384_1005002013300012357Vadose Zone SoilQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA*
Ga0182039_1091247223300016422SoilAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0187802_1030688523300017822Freshwater SedimentARRGHRRAARPAVTLTVTASSPVPPVIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA
Ga0187806_100586233300017928Freshwater SedimentVIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA
Ga0187809_1007679413300017937Freshwater SedimentPPVLIQFNWSQTVPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0187808_1052788223300017942Freshwater SedimentAITLSPSATEPVPPVLIQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA
Ga0187847_1062675313300017948PeatlandATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0187779_1049270923300017959Tropical PeatlandAATRPVPPVLIQLGWSQTIPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0187781_1142610813300017972Tropical PeatlandIQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA
Ga0187855_1047402023300018038PeatlandLIQFSWSQTLPLALAGAVLPVLAAALTVARRPDAAVELRAAESA
Ga0187887_1042687113300018043PeatlandITLTTSATTPVPPALVQFAWSQTLLLALAVAVLPVLAAFLTIARRPDPAAELRAAEAA
Ga0187766_1074394113300018058Tropical PeatlandPVLIQFSWAQTLPLALAVAVLPVLAAALTIMRRPDAAAELRAAEAA
Ga0187772_1063656123300018085Tropical PeatlandQFAWPQVLLLALAVAVLPVLTVTLTIARRPDAAAELRAAEAA
Ga0210395_1005998913300020582SoilVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210395_1092237313300020582SoilLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0210395_1121705913300020582SoilPPVTIQFDWAQTLPLALVVATLPVLVAATVIARRPDPAAELRTAEAA
Ga0210408_1097127023300021178SoilWSQTIPLALAVAVLPVLAAALTVARRPDAAAELRAAEAT
Ga0210396_1176516423300021180SoilAITLTSSATAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA
Ga0210393_1095867913300021401SoilTAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210393_1110393323300021401SoilQFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA
Ga0210397_1085946813300021403SoilQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210390_1029643613300021474SoilAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0187846_1019250813300021476BiofilmWVQTLPLALAVAALPVLVAAAVIVRRPDPAAELRTAEAA
Ga0210402_1128653713300021478SoilLIQFGWVQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA
Ga0228598_112827523300024227RhizosphereDWAQTLPLALAVAALPVAVAAVVIARRPDPAAELRTAEAA
Ga0257162_104608223300026340SoilPVPPVLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT
Ga0209580_1041538923300027842Surface SoilGWSQTLPLALAVAVVPVLAAGLTITRRPDAAAALRAAEAA
Ga0209517_1001917013300027854Peatlands SoilPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0209693_1004205713300027855SoilPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0209006_1118533413300027908Forest SoilPVLIQFNWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302226_1013406613300028801PalsaATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302229_1023744813300028879PalsaIQFSWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0311340_1023520723300029943PalsaLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0311371_1149682023300029951PalsaLTPSATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0311355_1081846913300030580PalsaTTPVPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302325_1200609123300031234PalsaVPPVLIEFSWSQTLPLALAVAILPVLAAALTVARRPDAAAQLRAAESA
Ga0302325_1274396623300031234PalsaLPLTVAVAVLPVLAAALTVARRPDAAAELRTAEAA
Ga0318574_1049579713300031680SoilPPVLIQLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA
Ga0318572_1026495613300031681SoilVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318572_1033968323300031681SoilVPAVTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEA
Ga0310686_10027775623300031708SoilTLSPSATVPVPPVLIQFGWSQTLPLALAVAVVPVLAAALTITRRPDPAAALRAAEAA
Ga0307474_1161861113300031718Hardwood Forest SoilSQTLPLALAVAVIPVLAAALTITRRPDPAAALRAAEAA
Ga0318493_1013561323300031723SoilSATTPVPPVLIEFGWSQTLSLALAIAVLPVLAAALTIARRPDAAAGLRAAESL
Ga0306918_1150289123300031744SoilTTPVPPVLIQFGWAQILPLALAIAVLPVLAAALTVARRPDAAAELRTAEAT
Ga0318492_1001904613300031748SoilAPAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318492_1026536823300031748SoilPVPPVLIEFGWSQILPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0318494_1022764613300031751SoilTSSATTPVPPVLIEFDWAQTLALALAIAVLPVLAAALTVARRPDAAAELRTAEAT
Ga0318521_1002717113300031770SoilSAPAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318543_1031292823300031777SoilAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318498_1001435513300031778SoilTTAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318547_1003182123300031781SoilSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318552_1006011313300031782SoilVPAVTLTATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEA
Ga0318552_1060573513300031782SoilIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAARR
Ga0318523_1040595423300031798SoilPVLIQLAWSQTLPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0318568_1016991223300031819SoilVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318567_1047573813300031821SoilDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318564_1044540913300031831SoilTATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318511_1007709313300031845SoilAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318551_1054904713300031896SoilVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318520_1040045013300031897SoilLTSSATTPVPPVQIQFGWSQTLALALTVAVLPVLAAALTIMRRPDAAAELRAAEAA
Ga0306923_1222088323300031910SoilTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0308174_1012848013300031939SoilTLLLALAVAVLPVLASALTLARRPDAAAELRAAEAA
Ga0306926_1251744013300031954SoilVTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0306926_1279016123300031954SoilQLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA
Ga0318570_1051751623300032054SoilIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318510_1014580613300032064SoilASTPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318553_1000770443300032068SoilQALPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0310890_1049322423300032075SoilAQMLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA
Ga0311301_1085553223300032160Peatlands SoilTSSATTPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0311301_1268748913300032160Peatlands SoilLLVPAITLTSSAAVPVPPVRVQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0307472_10259144523300032205Hardwood Forest SoilGWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0335078_1211969213300032805SoilLLGAAGLALAVTVIPVLAAALTVAHQPDPAARLRTPEDT
Ga0335071_1118474413300032897SoilIIQFDWAQTLPLALAVAVLPVLLAAAVIARRPDPAAELRTAEAA


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