Basic Information | |
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Family ID | F105546 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 48 residues |
Representative Sequence | LIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 96.00 % |
% of genes from short scaffolds (< 2000 bps) | 88.00 % |
Associated GOLD sequencing projects | 85 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (93.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (51.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Freshwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Peatlands Soil Agricultural Soil Soil Soil Soil Hardwood Forest Soil Soil Soil Rice Paddy Soil Tropical Peatland Bog Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Biofilm Termite Gut Populus Rhizosphere Rhizosphere Corn Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ51221_103951702 | 3300003505 | Forest Soil | VLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA* |
Ga0070711_1006446841 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | PPVLIQLGWSQILPLAVAVAVLPVLAAGLTIARRPDAAAELRAAESA* |
Ga0066670_100976222 | 3300005560 | Soil | PVPPVLIQFGWSQTLTLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT* |
Ga0070762_109595172 | 3300005602 | Soil | PVTIQFDWAQTLPLALAVATLPVLVAAAVIARRSDPAAELRTAEAA* |
Ga0070763_100698221 | 3300005610 | Soil | PPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA* |
Ga0075272_10976172 | 3300005900 | Rice Paddy Soil | RIDLAWPQTLTLAVVVAVLPVLAVALTVARRPDPAAQLRAAESG* |
Ga0070765_1017314721 | 3300006176 | Soil | VPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRATESA* |
Ga0079222_102754681 | 3300006755 | Agricultural Soil | TAATRPVPPVLIQFGWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA* |
Ga0079222_113538992 | 3300006755 | Agricultural Soil | VLIPFGWTQTLLLALAVAVLPVLASALTLARPPDSAAELTADEAA* |
Ga0079222_122660912 | 3300006755 | Agricultural Soil | VLIQFGWAQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA* |
Ga0079220_120749551 | 3300006806 | Agricultural Soil | PVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA* |
Ga0075426_105296682 | 3300006903 | Populus Rhizosphere | PPVLIQLGWSQILLLALAVAVLPVLAAGLTIARRPDAAAELRAAEST* |
Ga0105241_109199532 | 3300009174 | Corn Rhizosphere | LTSAATAPVPPVLIQLGWSQILALALAVAVLPVLAAGLTIARRPDAAAELRAAESA* |
Ga0116214_11969962 | 3300009520 | Peatlands Soil | PPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA* |
Ga0116214_14461651 | 3300009520 | Peatlands Soil | TRPVPPVLIQFAWAQTLALALAVAVLPVLAASLTIARRPDPAAELRAAEAA* |
Ga0116224_102206962 | 3300009683 | Peatlands Soil | VPAITLTSSATVPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA* |
Ga0116217_102300142 | 3300009700 | Peatlands Soil | WSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA* |
Ga0116223_100279673 | 3300009839 | Peatlands Soil | PLALAVAVLPVLAAALTIARRPDAAAELRASESA* |
Ga0127503_104869841 | 3300010154 | Soil | VPAVLIKFDWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT* |
Ga0127503_105104392 | 3300010154 | Soil | VPPVLIQFGWSQALLLALAVAVLPVLAAALTLARRPDAAAELRAAESA* |
Ga0131853_113809662 | 3300010162 | Termite Gut | QTLPLALAVATLPVLVAEAVVARRPDPAAELRTAEAA* |
Ga0074044_106043831 | 3300010343 | Bog Forest Soil | TARSPVPPVIIQFDWAQTLPLALAVATLPVLVAAAVIARRPDPAADLRTAEAA* |
Ga0126378_105657871 | 3300010361 | Tropical Forest Soil | IEFGWAQTLALALAVAVLPVLAAALTVARRPDAAAELRTAEAT* |
Ga0134128_122135231 | 3300010373 | Terrestrial Soil | APVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA* |
Ga0126350_105537332 | 3300010880 | Boreal Forest Soil | LVPAVTLTAVATTPVPPVIIQFGWLQTLALALAVAVLPVLAAALTIIRRPDAAAELRAAESA* |
Ga0137363_115762951 | 3300012202 | Vadose Zone Soil | KPVPPVLIEFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT* |
Ga0137378_118583512 | 3300012210 | Vadose Zone Soil | VLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT* |
Ga0137384_100500201 | 3300012357 | Vadose Zone Soil | QTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA* |
Ga0182039_109124722 | 3300016422 | Soil | AATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA |
Ga0187802_103068852 | 3300017822 | Freshwater Sediment | ARRGHRRAARPAVTLTVTASSPVPPVIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA |
Ga0187806_10058623 | 3300017928 | Freshwater Sediment | VIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA |
Ga0187809_100767941 | 3300017937 | Freshwater Sediment | PPVLIQFNWSQTVPLALAVAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0187808_105278822 | 3300017942 | Freshwater Sediment | AITLSPSATEPVPPVLIQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA |
Ga0187847_106267531 | 3300017948 | Peatland | ATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA |
Ga0187779_104927092 | 3300017959 | Tropical Peatland | AATRPVPPVLIQLGWSQTIPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA |
Ga0187781_114261081 | 3300017972 | Tropical Peatland | IQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA |
Ga0187855_104740202 | 3300018038 | Peatland | LIQFSWSQTLPLALAGAVLPVLAAALTVARRPDAAVELRAAESA |
Ga0187887_104268711 | 3300018043 | Peatland | ITLTTSATTPVPPALVQFAWSQTLLLALAVAVLPVLAAFLTIARRPDPAAELRAAEAA |
Ga0187766_107439411 | 3300018058 | Tropical Peatland | PVLIQFSWAQTLPLALAVAVLPVLAAALTIMRRPDAAAELRAAEAA |
Ga0187772_106365612 | 3300018085 | Tropical Peatland | QFAWPQVLLLALAVAVLPVLTVTLTIARRPDAAAELRAAEAA |
Ga0210395_100599891 | 3300020582 | Soil | VLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA |
Ga0210395_109223731 | 3300020582 | Soil | LIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0210395_112170591 | 3300020582 | Soil | PPVTIQFDWAQTLPLALVVATLPVLVAATVIARRPDPAAELRTAEAA |
Ga0210408_109712702 | 3300021178 | Soil | WSQTIPLALAVAVLPVLAAALTVARRPDAAAELRAAEAT |
Ga0210396_117651642 | 3300021180 | Soil | AITLTSSATAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA |
Ga0210393_109586791 | 3300021401 | Soil | TAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA |
Ga0210393_111039332 | 3300021401 | Soil | QFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA |
Ga0210397_108594681 | 3300021403 | Soil | QTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA |
Ga0210390_102964361 | 3300021474 | Soil | APVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA |
Ga0187846_101925081 | 3300021476 | Biofilm | WVQTLPLALAVAALPVLVAAAVIVRRPDPAAELRTAEAA |
Ga0210402_112865371 | 3300021478 | Soil | LIQFGWVQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA |
Ga0228598_11282752 | 3300024227 | Rhizosphere | DWAQTLPLALAVAALPVAVAAVVIARRPDPAAELRTAEAA |
Ga0257162_10460822 | 3300026340 | Soil | PVPPVLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT |
Ga0209580_104153892 | 3300027842 | Surface Soil | GWSQTLPLALAVAVVPVLAAGLTITRRPDAAAALRAAEAA |
Ga0209517_100191701 | 3300027854 | Peatlands Soil | PPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA |
Ga0209693_100420571 | 3300027855 | Soil | PVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0209006_111853341 | 3300027908 | Forest Soil | PVLIQFNWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0302226_101340661 | 3300028801 | Palsa | ATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0302229_102374481 | 3300028879 | Palsa | IQFSWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0311340_102352072 | 3300029943 | Palsa | LIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA |
Ga0311371_114968202 | 3300029951 | Palsa | LTPSATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA |
Ga0311355_108184691 | 3300030580 | Palsa | TTPVPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0302325_120060912 | 3300031234 | Palsa | VPPVLIEFSWSQTLPLALAVAILPVLAAALTVARRPDAAAQLRAAESA |
Ga0302325_127439662 | 3300031234 | Palsa | LPLTVAVAVLPVLAAALTVARRPDAAAELRTAEAA |
Ga0318574_104957971 | 3300031680 | Soil | PPVLIQLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA |
Ga0318572_102649561 | 3300031681 | Soil | VIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318572_103396832 | 3300031681 | Soil | VPAVTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEA |
Ga0310686_1002777562 | 3300031708 | Soil | TLSPSATVPVPPVLIQFGWSQTLPLALAVAVVPVLAAALTITRRPDPAAALRAAEAA |
Ga0307474_116186111 | 3300031718 | Hardwood Forest Soil | SQTLPLALAVAVIPVLAAALTITRRPDPAAALRAAEAA |
Ga0318493_101356132 | 3300031723 | Soil | SATTPVPPVLIEFGWSQTLSLALAIAVLPVLAAALTIARRPDAAAGLRAAESL |
Ga0306918_115028912 | 3300031744 | Soil | TTPVPPVLIQFGWAQILPLALAIAVLPVLAAALTVARRPDAAAELRTAEAT |
Ga0318492_100190461 | 3300031748 | Soil | APAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA |
Ga0318492_102653682 | 3300031748 | Soil | PVPPVLIEFGWSQILPLALAVAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0318494_102276461 | 3300031751 | Soil | TSSATTPVPPVLIEFDWAQTLALALAIAVLPVLAAALTVARRPDAAAELRTAEAT |
Ga0318521_100271711 | 3300031770 | Soil | SAPAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA |
Ga0318543_103129282 | 3300031777 | Soil | AQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318498_100143551 | 3300031778 | Soil | TTAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA |
Ga0318547_100318212 | 3300031781 | Soil | SPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318552_100601131 | 3300031782 | Soil | VPAVTLTATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEA |
Ga0318552_106057351 | 3300031782 | Soil | IIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAARR |
Ga0318523_104059542 | 3300031798 | Soil | PVLIQLAWSQTLPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA |
Ga0318568_101699122 | 3300031819 | Soil | VPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0318567_104757381 | 3300031821 | Soil | DWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0318564_104454091 | 3300031831 | Soil | TATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318511_100770931 | 3300031845 | Soil | AQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0318551_105490471 | 3300031896 | Soil | VTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0318520_104004501 | 3300031897 | Soil | LTSSATTPVPPVQIQFGWSQTLALALTVAVLPVLAAALTIMRRPDAAAELRAAEAA |
Ga0306923_122208832 | 3300031910 | Soil | TASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0308174_101284801 | 3300031939 | Soil | TLLLALAVAVLPVLASALTLARRPDAAAELRAAEAA |
Ga0306926_125174401 | 3300031954 | Soil | VTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA |
Ga0306926_127901612 | 3300031954 | Soil | QLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA |
Ga0318570_105175162 | 3300032054 | Soil | IQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318510_101458061 | 3300032064 | Soil | ASTPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP |
Ga0318553_100077044 | 3300032068 | Soil | QALPLALAVAVLPVLAAALTIARRPDAAAELRAAESA |
Ga0310890_104932242 | 3300032075 | Soil | AQMLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA |
Ga0311301_108555322 | 3300032160 | Peatlands Soil | TSSATTPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA |
Ga0311301_126874891 | 3300032160 | Peatlands Soil | LLVPAITLTSSAAVPVPPVRVQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA |
Ga0307472_1025914452 | 3300032205 | Hardwood Forest Soil | GWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA |
Ga0335078_121196921 | 3300032805 | Soil | LLGAAGLALAVTVIPVLAAALTVAHQPDPAARLRTPEDT |
Ga0335071_111847441 | 3300032897 | Soil | IIQFDWAQTLPLALAVAVLPVLLAAAVIARRPDPAAELRTAEAA |
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