NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105460

Metagenome Family F105460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105460
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 77 residues
Representative Sequence IFAVIIIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.00 %
% of genes from short scaffolds (< 2000 bps) 2.00 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(10.000 % of family members)
Environment Ontology (ENVO) Unclassified
(39.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(50.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.47%    β-sheet: 0.00%    Coil/Unstructured: 46.53%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00916Sulfate_transp 3.00
PF13671AAA_33 3.00
PF07566DUF1543 2.00
PF04116FA_hydroxylase 2.00
PF01011PQQ 1.00
PF01039Carboxyl_trans 1.00
PF04909Amidohydro_2 1.00
PF01757Acyl_transf_3 1.00
PF13560HTH_31 1.00
PF00498FHA 1.00
PF00753Lactamase_B 1.00
PF02687FtsX 1.00
PF13487HD_5 1.00
PF00291PALP 1.00
PF02416TatA_B_E 1.00
PF13442Cytochrome_CBB3 1.00
PF13669Glyoxalase_4 1.00
PF12833HTH_18 1.00
PF07995GSDH 1.00
PF03069FmdA_AmdA 1.00
PF00128Alpha-amylase 1.00
PF12706Lactamase_B_2 1.00
PF13360PQQ_2 1.00
PF13302Acetyltransf_3 1.00
PF07705CARDB 1.00
PF01966HD 1.00
PF01738DLH 1.00
PF03576Peptidase_S58 1.00
PF00365PFK 1.00
PF13792Obsolete Pfam Family 1.00
PF03551PadR 1.00
PF13616Rotamase_3 1.00
PF03724META 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0659Sulfate permease or related transporter, MFS superfamilyInorganic ion transport and metabolism [P] 3.00
COG2252Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) familyNucleotide transport and metabolism [F] 3.00
COG2233Xanthine/uracil permeaseNucleotide transport and metabolism [F] 3.00
COG3191L-aminopeptidase/D-esteraseAmino acid transport and metabolism [E] 2.00
COG3000Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilyLipid transport and metabolism [I] 2.00
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 1.00
COG4799Acetyl-CoA carboxylase, carboxyltransferase componentLipid transport and metabolism [I] 1.00
COG3280Maltooligosyltrehalose synthaseCarbohydrate transport and metabolism [G] 1.00
COG3187Heat shock protein HslJPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2421Acetamidase/formamidaseEnergy production and conversion [C] 1.00
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 1.00
COG02056-phosphofructokinaseCarbohydrate transport and metabolism [G] 1.00
COG1826Twin-arginine protein secretion pathway components TatA and TatBIntracellular trafficking, secretion, and vesicular transport [U] 1.00
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 1.00
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 1.00
COG1523Pullulanase/glycogen debranching enzymeCarbohydrate transport and metabolism [G] 1.00
COG0825Acetyl-CoA carboxylase alpha subunitLipid transport and metabolism [I] 1.00
COG0777Acetyl-CoA carboxylase beta subunitLipid transport and metabolism [I] 1.00
COG0366Glycosidase/amylase (phosphorylase)Carbohydrate transport and metabolism [G] 1.00
COG02961,4-alpha-glucan branching enzymeCarbohydrate transport and metabolism [G] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.00 %
All OrganismsrootAll Organisms2.00 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_102412005All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300009100|Ga0075418_10925700All Organisms → cellular organisms → Bacteria943Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater2.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere2.00%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere2.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere2.00%
SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Sediment1.00%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009527Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold CreekEnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011430Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032263Coastal sediment microbial communities from Maine, United States - Phippsburg sediment 1EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10198796643300000364SoilQHLRRYISDNGLVGASYPRMEGDYVLPLHLHGLQELNSQVGRFFDEALYSLAIGYEERARATAGLSSSS*
JGI1027J12803_10241200523300000955SoilIIIKQHLRRYISDNGLVGASYPRMEGDYVLPLHLHGLQELNSQVGRFFDEALYSLAIGYEERARATAGLSSSS*
JGI10216J12902_11240088913300000956SoilQGIPISEIVYAIILLKRHLRRYIRDNGLVDAAFPQTESDYVLPMHLYSLQDLNARVGEFFDEALYHLARGYELKANAAMRVSIA*
Ga0055439_1009139623300004019Natural And Restored WetlandsFGQGIPLSEIVYAVLILKHHLRRYIRDNGLIEASFPRVESDYILPMHLHSLQDLNERVGEFFDEALYHLARGYEAEAGRAGAAAR*
Ga0063455_10165493623300004153SoilLILKNTLRRYIRDNGLVEETVPRLLGDYVLPIHLHGLMDLNTQVGEFFDEAIYHLACGYEAGAKDGVSP*
Ga0063356_10262404423300004463Arabidopsis Thaliana RhizosphereRFGQGIPLSEIVYAIIILKHHLRRYIHDNGLVEFAFPRTEGDYVLPMHLYSLQDLNTRVGEFFDEALYYLTRGYEAETRLSAASKAH*
Ga0062594_10329993013300005093SoilIIIKQHLRRYISDNGLVDEAFPRMEGDYVLPLHLQSLHDLHVLVGQFFDEALYYLAIGYEERLRGPR*
Ga0065712_1077289223300005290Miscanthus RhizosphereDQGIPLSELIFAIIIIKQHLQRYISDNGLVDAAFPRVESDYILPLHLHGLQELNARVGLFFDEALYLLACGYEERARAVR*
Ga0070670_10176409423300005331Switchgrass RhizosphereLKQHLRRYIRDHGLIEASFPRVEGDYVLPMHLHSLQDLNEQVGLFFDEALFHLTKGYEKHLLASAR*
Ga0066388_10274751223300005332Tropical Forest SoilRYISDNGLVDSSFPRAEGDFVLPLHLHSLHDLNGRVGLFFDEALYYLASGYEERVRAIVDSRPART*
Ga0068869_10182931813300005334Miscanthus RhizosphereQGIPVSQLIYATIILKQHLRRYISDNGLVDASFPRVETDYVLPLHLHSLQELNVRVGQFFDEALYCLARGYEEQAAALGNITP*
Ga0070666_1009270513300005335Switchgrass RhizosphereYISDNGLVAASFPRMDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEDRARTGVSAGAGVEPQPRDR*
Ga0068868_10197778713300005338Miscanthus RhizosphereRRFDQEIPLSEIVYAIIVLKQHLRQYIRDNGLVEASFPRTEMDYVLPMHMNSLQELNVKVGQFFDEALYHLTIGYEQAARRK*
Ga0070689_10116006023300005340Switchgrass RhizosphereKQHLRRYISDNGLVAASFPRMDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEDRARTGVSAGAGVEPQPRDR*
Ga0070675_10079908713300005354Miscanthus RhizosphereSEIVYAIIVLKQHLSRYIGDNGLVDAAFPRTESEYVLPMHLHSLQELNTRVGEFFDEALYQLTCGYEQRARREPPAVAL*
Ga0070673_10118959013300005364Switchgrass RhizosphereRRFDQEIPLSEIVYAIIILKQHLRRYIRDNGLVEATFPRTEMDYVLPMHMNSLQELNLQVGQFFDEALYHLTIGYEQARGRA*
Ga0070672_10190307813300005543Miscanthus RhizosphereALILLKKHLRRYIQDHGLIDASFPRIEGDYVLPMHLHSLQDLNARVGEFFDEALYHLARGYEHQANRVPPKVAQ*
Ga0070686_10057624023300005544Switchgrass RhizosphereLRRYISDNGLVEASFPLVESDYVLPMHLHSLHNLSTEVGRFFDEALYSLAVGYEERARTGVSPDLAPAPPR*
Ga0068854_10044375113300005578Corn RhizosphereSELVFAIIIIKQHLHRYIGDHGLVGAAFPRVEADYVLPLHLHSLQELNLQVGRFFDEALYSLAIGYEERARTDVPRDIARAGVAQK*
Ga0070702_10180491113300005615Corn, Switchgrass And Miscanthus RhizosphereQHIPLSELIFAVIVIKQHLSRYIADNGLVDASFPRVESDYVLPMHLYSLQSLNSQVGRFFDEALYSLAIGYEERGRIAVTPADSTVRGSRPD*
Ga0068864_10066117023300005618Switchgrass RhizosphereLHLRRYIREHGLVDAAFPRSEADYILPMHLHNLQELNGQVSAFFDEALFALTEGYEHAATGASR*
Ga0068861_10256446813300005719Switchgrass RhizosphereILVLKHHLRRYIHDNGIVDAAFPSTDSDYVLPMHLYSLQDLNTRVGEFFDEALYHLTRGYEQRAGRVTPMLAQ*
Ga0066903_10175459533300005764Tropical Forest SoilSELIFAVIVIKQHLRRYISDNGLVGASFPSVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEERATEPAGR*
Ga0066903_10444517623300005764Tropical Forest SoilVLKRHLRRYIGDNGLVDAAFPRMEGDYVLPMHLYNLEDLNVSVGQFFDEAIYCLARGYEQGAGRVRSTKAG*
Ga0066903_10502355223300005764Tropical Forest SoilAVIVIKQHLRRYISDNGLIAASFPHIDGDYVLPLHLHSLQGLNTRVEGFFDEALYDLAIGYEERARAGVAVR*
Ga0068863_10123393723300005841Switchgrass RhizosphereEILYAVIVLKQHMGRYVVDNGLVDAAFPRIDGDYVLPMHLSSLHDLHARLGRFFDEALYYLACGYEAEAEEVAARGPAHRA*
Ga0068862_10043171923300005844Switchgrass RhizosphereDQGIPISEIVYAIIVLKQHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLQDLNARVGEFFDEALYHLARGYEHQANRVPPKVAQ*
Ga0075422_1033486913300006196Populus RhizosphereIILKQHLRRYIRDNGLVEASFPSVETDYVLPMHLNSLQELNAQVGEFFDEALYYLAVGYEEAAQRT*
Ga0097621_10156919733300006237Miscanthus RhizosphereVIVLKQHMARYILDNGLVDASFPRIDSDYVLPMHLNSLQELNTQVGQFFDEALYHLACGYEDEAKRLERQHR*
Ga0068871_10005356043300006358Miscanthus RhizosphereVRPGISLSEIVYAVIVLKQHMARYIVDNGLVDASFPLVDNDYVLPMHLSSLQDLNNRVSQFFDEAIYHLARGYEEGAQRIR*
Ga0066653_1075004513300006791SoilLSEIVYAIIILKQHLRRYIQDNGLVEAAFPRTESDYVLPMHLHSLQELNARVGEFFDEALYYLARGYEAEAKLNAMAS*
Ga0075425_10307574213300006854Populus RhizosphereRIPLSEIVYAIVVIKHHLRQYIRDNGLVDAAFPLVDREYVLPMHLHSLQELNTTVGQFFDEALYHLTRGYETGARRGGGAASEPAR*
Ga0075418_1092570033300009100Populus RhizosphereIVYAIVILKQHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLHDLNVRVGEFFDEALYYLTRGYEAEAKRV*
Ga0075418_1158827213300009100Populus RhizosphereIVYAIVILKQHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLHDLNVRVGEFFDEALYYLTRGYEAEEKRA*
Ga0111538_1151173333300009156Populus RhizosphereDQGIALSEIVYAIIVIKAHLRRYIQDNGVVDAAFPRIDSDYVLPMHLHSLQELNVRVGQFFDEALYQLSCGYEAGARQKV*
Ga0111538_1308465423300009156Populus RhizosphereHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLHDLNVRVGEFFDEALYYLTRGYEAEEKRA*
Ga0114942_117060713300009527GroundwaterVVVLKQHLRRYIQDNGLVDAAFSRVEREYVLPLHLHSLQELNATVGTFFDEAIYHLTRGYEAAARQA*
Ga0114942_124995713300009527GroundwaterQIVSAIIVIKTHLRRYIRDNGLIDAAFPRVEADYILPMHLNSLQELNELVSAFFDEAMFDLAVGYEQAAAPGR*
Ga0134121_1072596823300010401Terrestrial SoilIVIKQHLRRYISDNGLVEASFPRVEADYVLPMHLHSLQELNTQVGRFFDEALYWLAIGYEERARTGVSQDPARSHER*
Ga0137423_101153743300011430SoilVLKQHLRTYIRDNGLVEAAFPRVEQEYVLPMHLHSLQDLNAQVGTFFDEALYELARGYEGAAKQAAVPV*
Ga0157295_1041167923300012906SoilVLKRHLRHFIQQNGLIEAAFPATDGDYVLPMHLHSLQALNGDIGLFFDEALYQLACGYEDRARQGAAAR*
Ga0164309_1012677423300012984SoilILKQHMGRYILDNGLVDAAFPRIDGDYVLPMHLNSLQDLHARLGRFFDEALYYLACGYEAEANEVAARDPAHRA*
Ga0157378_1301572023300013297Miscanthus RhizosphereVVYAVIVLKSHLRRYIRDHGLMDAAFPRVEADYILPMHLHSLQELNGQVSDFFDEALYALAL
Ga0163162_1030527613300013306Switchgrass RhizosphereSEIVYAVIVLKQHMARYILDNGLVDASFPRIDSDYVLPMHLNSLQELNTQVGQFFDEALYHLACGYEDEAKRLERQHR*
Ga0163162_1130421713300013306Switchgrass RhizosphereLSELIFAVIVIKQHLRRYISDNGLVAASFPRMDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEDRARTGVSAGAGVEPQPRDR*
Ga0163162_1270156923300013306Switchgrass RhizosphereSEIVYAVIVLKQHMARYILDNGLVDASFPRIDSDYVLPMHLNSLQDLNTQVGQFFDEALYRLTCGYEEAKRLERPDR*
Ga0163162_1331465923300013306Switchgrass RhizosphereEQGIPLSEILYAVIVLKQHMGRYILDNGLVDAAFPRIDGDYVLPMHLNSLQDLHARLGRFFDEALYYLACGYEAEAKAVALRASTYRA*
Ga0163163_1040568733300014325Switchgrass RhizosphereVILKQHLRQYIRDNGLIEATFPRSESDYVLPLHMNSLQELNLQVGRFFDEALYHLAIGYELAGRRR*
Ga0163163_1228037523300014325Switchgrass RhizosphereQGIPLSEIVYAVIVLKQHMARYILDNGLVDASFPRIDSDYVLPMHLNSLQELNTQVGQFFDEALYHLTCGYEDEAKRLDRQHR*
Ga0173483_1009647823300015077SoilYAVIIIKQHLRRYISDNGLVDEAFPRMEGDYVLPLHLQSLHDLHVLVGQFFDEALYYLAIGYEERLRGPR*
Ga0132258_1130272543300015371Arabidopsis RhizosphereVIVIKQHLRRYISDNGIVGASFPLVEGDYVLPLHLHSLQELNTQVGRFFDEALHSLAIGYEERARTGLSQGLVPS*
Ga0132256_10202269323300015372Arabidopsis RhizosphereFDQEIPLSEIVYAIIVLKQHLRQYIRDNGLVEASFPRTEMDYVLPMHMNSLQELNLQVGLFFDEALYHLAIGYEKAGRRA*
Ga0132256_10253873823300015372Arabidopsis RhizosphereVYAVIILKQHLHRYVREHGIVEASFPRIDQDYVLPMHLHSLQELNNTVGRFFDEALYYLASGYEAEASRVRAGVAAASRLPPAQSRG*
Ga0132257_10033070813300015373Arabidopsis RhizospherePLSELIFAIIIIKQHLRRYISDNGLVGASYPRMEGDYVLPLHLHGLQELNSQVGRFFDEALYSLAIGYEERARATAGLSSSS*
Ga0132257_10217960313300015373Arabidopsis RhizosphereIVLKQHLRRYIVDNGLVEASFPRVERDFVLPMHLHSLQELHATVNQFFDEALYYLVRGYEEARAAHAGVGSFSSVIGS*
Ga0132255_10406475513300015374Arabidopsis RhizospherePLSELIFAIIIIKQHLRRYISDNGLVDASFPRVEGDYVLPLHLHGLQELNAQVGRFFDEALYSLAVGYEERARAGLSPSS*
Ga0182038_1040119913300016445SoilNGLVAASFPRVDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEERANARGDAVAARQPD
Ga0163161_1031812133300017792Switchgrass RhizosphereVVLKSHLRRYIREHGLMDAAFPRVEADYILPMHLHSLQELNAQVSDFFDEALYALALGYEQTRVLSTSSK
Ga0163161_1052371223300017792Switchgrass RhizosphereVLKQHMRQYIVDNGLVDASFPRVDNDYVLPMHLHSLQELNTRIGQFFDEALYRLACGYEEEARRRSEAR
Ga0187785_1036805013300017947Tropical PeatlandSEIIYAVIILKQHMRRYIADNGLVDASFPRVEGDYVLPMHLSSLQDLNARVSDFFDQAIYHLARGYEEEAQRIRESRQPADRR
Ga0187765_1019821623300018060Tropical PeatlandLSEIVYAIIILKQHLRQYIRDNGLVDAAFPRIEGDYLLPMHLHSLQDLNARVGEFFDEALYHLANGYEAEARATQSAKGR
Ga0184611_121397323300018067Groundwater SedimentAIIVLKQHLRRYVRENGLIEASFPRINGDYVLPMHLNSLQELNTQVGQFFDEALYHLTCGYEDEAKRLERQRR
Ga0187774_1053657823300018089Tropical PeatlandQKIQLSEIVYSIIILKQHLRRYIQENGLVDAAFPPVEREYVLPMHLHSVQELNASVGQFFDEALYHLACGYEAEARRVGAASPKPAR
Ga0173479_1025550323300019362SoilRRFDQEIPLSEIVYAIIILKQHLRQYIRDNGLVEASFPRTEMDYVLPMHMNSLQELNLQVGQFFDEALYHLTIGYEQARGRA
Ga0210397_1128333723300021403SoilIPLSELVYAMIVLKRHLHRYIEDNGLVDAAFPRFDADYVLPMHLRSLHDLNQQVTAFFDKAIYALARGYEKRSAEALVTAHTR
Ga0247794_1005908313300024055SoilIVYAVIIMKLHLRRYIREHGLVDAAFPRSEADYILPMHLHNLQELNGQVSAFFDEALFALTEGYEHAATGASR
Ga0207681_1073418813300025923Switchgrass RhizosphereKQHLRRYIRDNGLVEATFPRTEMDYVLPMHMNSLQELNLQVGQFFDEALYHLTIGYEQARGRA
Ga0207659_1171272723300025926Miscanthus RhizosphereIALNEIVYAIIVLKQHLRRYVRENGLIEASFPRTEGDYVLPMHLNSLQDLNAQIGQFFDEALYHLAVGYEQASKGS
Ga0207701_1076323313300025930Corn, Switchgrass And Miscanthus RhizosphereLSEIVYAIIILKQHLRRYIHDNGLVDAAFPRTESDYVLPMHLHGLQDLNTRVGEFFDEALYYLTRGYEAEARLRAAGKAH
Ga0207670_1105803623300025936Switchgrass RhizosphereFAVIVIKQHLRRYISDNGLVAASFPRMDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEDRARTGVSAGAGVEPQPRDR
Ga0207689_1006129113300025942Miscanthus RhizosphereRMYAETMAGLVNTINRAIDQGIPVSQLIYATIILKQHLRRYISDNGLVDASFPRVETDYVLPLHLHSLQELNSRVGRFFDEALYCLACGYEERAKVDRQI
Ga0207679_1104870813300025945Corn RhizosphereIVILKQHLRQYIRDNGLIEAAFPRSEADYVLPLHMNSLQELNLQVGQFFDEALYHLAIGYELAGRRR
Ga0207712_1092342623300025961Switchgrass RhizosphereMVALGDRCCDRLVLKQHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLQDLNARVGEFFDEALYHLARGYEHQANRVPLKVAQ
Ga0207640_1059581113300025981Corn RhizosphereIPLSELVFAIIIIKQHLHRYIGDHGLVGAAFPRVEADYVLPLHLHSLQELNLQVGRFFDEALYSLAIGYEERARTDVPRDIARAGVAQK
Ga0207675_10239889813300026118Switchgrass RhizosphereSEIVYAILVLKHHLRRYIHDNGIVDAAFPSTDSDYVLPMHLYSLQDLNTRVGEFFDEALYHLTRGYEQRAGRVTPMLAQ
Ga0207683_1040881223300026121Miscanthus RhizosphereWGRRRFDQGIPLSEIVYAVIVLKQHMARYILDNGLVDASFPRIDSDYVLPMHLNSLQELNTQVGQFFDEALYHLACGYEDEAKRLERQHR
Ga0307498_1048503413300031170SoilIVLKQHLRRYIHDHGLIEASFPRIDGDYVLPMHLNSLQELNSQVGLFFDEALYHLAQGYEKANSPIAK
Ga0318534_1076966513300031544SoilKQHLRRYISDNGLVAASFPRVDGDYVLPLHLHSLQDLNTRVGRFFDEALYDLAIGYEERANARGDAVAARQPD
Ga0310887_1028567123300031547SoilVYAIIILKQHLRRYIHDNGLVEFAFPRTEGDYVLPMHLYSLQDLNTRVGEFFDEALYYLTRGYEAESRLSAASKPH
Ga0310887_1033371513300031547SoilYAIILIKAHLSRYIQDHGLIDSVFPTSEADYVLPMHMHSLQELNRMVSLFFDRALYHLALGYEAGGPAGGR
Ga0310887_1097410813300031547SoilGSRRSEQGIALSEIVYAVIVLKRHLRQYIRDNGLVDAAFPRTESEYVLPMHLHGLQELNARVGEFFDEALYHLARGYEHQGYSVPSKVA
Ga0310886_1111971213300031562SoilKQYLRRYIRDNGVVDTAFPRVDGDYLLPMHLQSLQELNTTVEMFFDEALYRLAAGYEGAAQPAV
Ga0310915_1102912813300031573SoilGQRFAQGIPLSELIFAVIIIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0318501_1043027313300031736SoilGIPLSELIFAVIVIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0318546_1120583823300031771SoilDQKIPLSEIVYAIIILKQHLRRYIQDNGLVDAAFPLVDREYVLPMHLHSLQELNTTVGLFFDEALYQLARGYEVEADRMTKPRPSAPAR
Ga0310893_1011230113300031892SoilIVYAIIILKQHLRRYIHDNGLVEFAFPRTEGDYVLPMHLYSLQDLNTRVGEFFDEALYYLTRGYEAESTLSAASKPH
Ga0310900_1123337923300031908SoilQGIPLSEIVYAIIILKQHLHRYIRDNGLVDAVFPRVDGDYVLPMHMQGLQDLNTTVSAFFDEALYHLARGYEAAARS
Ga0306922_1063426223300032001SoilGIPLSELIFAVIIIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0310897_1054587313300032003SoilGIPLSQIIYAILVLKQHLRRYIRDHGLVEASFPRVEQDYVLPMHLNSLQELNTQVGLFFDEALYHLAYGYEEEARTAVAAR
Ga0318563_1075809813300032009SoilIFAVIIIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0310899_1067033313300032017SoilLSEIIFAVIILKQHLRRYIRDNGLVDAAFPRVERDYVLPMHLHSLQELNFTVGTFFDEALYNLTRGYEAAAKRA
Ga0310890_1179934823300032075SoilIVLKQHLRRYVRDNGLIEASFPRIDGDYVLPMHLNSLQDLNAQIGQFFDEALYHLTVGYEQASRRS
Ga0306924_1043275923300032076SoilIDWGGQRFAQGIPLSELIFAVIVIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0318525_1012531413300032089SoilDWGGQRFAQGIPLSELIFAVIIIKQHLRRYINDNGLVAASFPRVDGDYVLPLHLHSLQDLNTQVGRFFDEALYDLALGYEARAREPARR
Ga0315912_1160751323300032157SoilIIIKQHLRSYISDNGLVGAAFPHIEGDYVLPLHLQSLHDLHVLVGQFFDEALYYLAIGYEERLRSQR
Ga0310896_1045695123300032211SoilVILKQHLRRYIRDNGLVDAAFPRIDGDYVLPMHLHSLQDLNGTLGQFFDEALWYLTRGYEAEARREPVRSY
Ga0316195_1073547713300032263SedimentVCAVIILKQHLRRYIRDHGLVDAASPRADSEYVLPMHLYGLQELNARVGEFFDRALYYLALGYEAEARAGGAARGTHAPGA
Ga0335076_1177539613300032955SoilLSQIVYAVIILKKHLARYIVENGLVTASFPRIEGDYVLPIHLNSLQELTTSVSQFFDEAIYQLACGYEDEARRVEGKAR
Ga0335084_1049506523300033004SoilKQHLRRYIHDHGLVDASFPRVEGDYVLPMHLHSLQELNTTVGQFFDEALYHLARAYETEASRAQRVTG
Ga0335084_1167937513300033004SoilFDQNIPLSEIVYAIIIMKQHLRRYIADHGLVDTAFSRVEGDYMLPMHLHSLQDLNARVGGFFDEALYHLSCGYEAEAKKNATQTGRR


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