NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105320

Metagenome / Metatranscriptome Family F105320

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105320
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 53 residues
Representative Sequence MREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSARVRVRNTY
Number of Associated Samples 48
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 48
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(48.000 % of family members)
Environment Ontology (ENVO) Unclassified
(86.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(65.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118
1Ga0066610_102583362
2Ga0066609_101527531
3Ga0066609_102315991
4Ga0066609_102597031
5Ga0066609_102628792
6Ga0075448_101631222
7Ga0102827_10389482
8Ga0102852_11357941
9Ga0105744_11250461
10Ga0114995_103771602
11Ga0114994_108959451
12Ga0114998_101342782
13Ga0114998_105613722
14Ga0115005_108316472
15Ga0115008_103818331
16Ga0115008_111514161
17Ga0115007_105492781
18Ga0115006_110794631
19Ga0115000_110177741
20Ga0115001_106243262
21Ga0114999_107215452
22Ga0133547_101061844
23Ga0133547_107120761
24Ga0133547_113360841
25Ga0133547_113666361
26Ga0133547_120376283
27Ga0129327_104404352
28Ga0134299_10455731
29Ga0181430_11480621
30Ga0206127_11608871
31Ga0206126_102996022
32Ga0206126_103058831
33Ga0206126_103716691
34Ga0206126_105165471
35Ga0233426_103964091
36Ga0308021_100047172
37Ga0308021_100093222
38Ga0308021_100138351
39Ga0308021_100163661
40Ga0308021_100258692
41Ga0308021_100437265
42Ga0308021_100501503
43Ga0308021_100605881
44Ga0308021_100742781
45Ga0308021_100771133
46Ga0308021_100917501
47Ga0308021_101191282
48Ga0308021_101418911
49Ga0308021_101890802
50Ga0308021_101915382
51Ga0308021_102211361
52Ga0308021_102403681
53Ga0308021_102876992
54Ga0308021_102939282
55Ga0308021_102977962
56Ga0308021_103076361
57Ga0308021_103332521
58Ga0302131_12638901
59Ga0308009_101237181
60Ga0308009_102517692
61Ga0308009_102887831
62Ga0308009_102977171
63Ga0308009_103328311
64Ga0302126_101083342
65Ga0302126_103218001
66Ga0307985_101622331
67Ga0307985_103246032
68Ga0307985_103272921
69Ga0308012_101558471
70Ga0308012_102160671
71Ga0308018_100440232
72Ga0308018_101158072
73Ga0308018_101710771
74Ga0308018_102681111
75Ga0308018_102695911
76Ga0308006_100801722
77Ga0308006_101715222
78Ga0308015_100329701
79Ga0308015_101368541
80Ga0308015_102148192
81Ga0308015_103111221
82Ga0308015_104565971
83Ga0308003_11503222
84Ga0307997_100682592
85Ga0308000_101093961
86Ga0308000_102178462
87Ga0315329_106229111
88Ga0314680_100425671
89Ga0314680_109140421
90Ga0314683_105029632
91Ga0314673_100418921
92Ga0314669_104328672
93Ga0314690_100616941
94Ga0314693_103620102
95Ga0314696_102202902
96Ga0314711_102689532
97Ga0314706_104760191
98Ga0314705_107010902
99Ga0314713_100257192
100Ga0314694_104857132
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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Variant

510152025303540455055MREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSARVRVRNTYSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Seawater
Freshwater To Marine Saline Gradient
Marine
Estuary Water
Seawater
Estuarine
Marine
Marine
Seawater
Seawater
20.0%13.0%6.0%48.0%5.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0066610_1025833623300004276MarineRGKCEEAMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGAQDCERVRVRNTTC*
Ga0066609_1015275313300004278MarineMREVLGPGRGVQAGEVEILAMAAEAGRETRQGAESDEESDGCDGAQDCERVRVRNTTY*
Ga0066609_1023159913300004278MarineMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCERVRVRNTTY*
Ga0066609_1025970313300004278MarineAGEVETPAMAAEAGRETRRGAESDEESDGCNEAQDSARVHVRVRNTH*
Ga0066609_1026287923300004278MarineMREVLGAGRGVQAGEVETPAMAAGARRATRQGAEGDEEGDGGDGAHDSERV*
Ga0075448_1016312223300006352MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGEESDEESDGCNEAQDSARVRVRNTH*
Ga0102827_103894823300007715EstuarineMREVLGAGRGVQAGEVETPAMAAEARRETRRGAETDEESDGCNEAQDSARVHVRVRNTSYILSRKAIPV
Ga0102852_113579413300007718EstuarineMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNCNCN*
Ga0105744_112504613300007863Estuary WaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDRNTLRALE*
Ga0114995_1037716023300009172MarineMREVLGVGRGVQAGEVETPAMAAEAGPETRRGAESDEESDGCNEAQDSARVHHVRVRNTY
Ga0114994_1089594513300009420MarineAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCNTTY*
Ga0114998_1013427823300009422MarineMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNTTY*
Ga0114998_1056137223300009422MarineVQAGEVEIPAMAAEAGIATRQGAESDEERDGCDGAQDCERVRG
Ga0115005_1083164723300009432MarineMRIEVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCERVWVRNTTY*
Ga0115008_1038183313300009436MarineLAAGHAGSVRRREVLGAGRGVQAGEVEVPAMAAEAGRETRRGAESDEESDGCDGAQDCERVRVHNTTY*
Ga0115008_1115141613300009436MarineGAGRGVQAGEVETPAMAAGARRETRRGAEGDEEDDGGDGVRLHLS*
Ga0115007_1054927813300009441MarineMREVLGTGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCERVRLWVRNTTY
Ga0115006_1107946313300009544MarineMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCNTTY*
Ga0115000_1101777413300009705MarineMYLSETPAMAAEAGRETRRGAESDEESDGCNEAQDSARVHHVRV
Ga0115001_1062432623300009785MarineVRGKCKEAMTEVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCERVRVRNTTY*
Ga0114999_1072154523300009786MarineMREVVGAGRGVQAGAVETPAMAAEAGRETRRGEESDEESDGCNEAQDSARVRVRNTY*
Ga0133547_1010618443300010883MarineWVRGKCEEAMREVLGAGRGVQAGEVEIPAMAAEAGSETRQGAASDVESDGCDGAQDCNTTY*
Ga0133547_1071207613300010883MarineMREVLGAGRGVQEAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNTTY
Ga0133547_1133608413300010883MarineGEVEVPAMAAEAGRETRRGAESDEESDGCDGAQDCERVRVRNATY*
Ga0133547_1136663613300010883MarineMCYSYNTPFSVFREVLGAGRGGQAVEVEIPAMAAEAGRETRQGAESNEESDGCDGAQDCERVRV
Ga0133547_1203762833300010883MarineGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAHDCNTTH*
Ga0129327_1044043523300013010Freshwater To Marine Saline GradientMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDRNTTY*
Ga0134299_104557313300014959MarineGKCEEAMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNTTY*
Ga0181430_114806213300017772SeawaterVQAGEVEIPAMAAEAGRETRRGAESDEESDGCNEAQDSARVHVRVRNTH
Ga0206127_116088713300020169SeawaterMREVVGAGRGVQAGDVETPAMAAEAGRETRRGAESDEESDGCDGAQDSARVRIRNAY
Ga0206126_1029960223300020595SeawaterGPEQGCHCLCEEAMREVLGAGRGVQEAGEVEIRIPAMAAEAGRETRQGVASDEESDGCDGAQDCNTTY
Ga0206126_1030588313300020595SeawaterVRGKCEEAMREVLGAGRGVQAGEVEIPAMAAEAGSETRQGAASDEESDGCDGAQDCNTTY
Ga0206126_1037166913300020595SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNTT
Ga0206126_1051654713300020595SeawaterMREVLGAGRGVQAGEVEIHVRIPAMSAEAGRETRQGAESDEESDGCDGAQDCY
(restricted) Ga0233426_1039640913300022920SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAERDEESDGCDGAQDCERVRVRNTT
Ga0308021_1000471723300031141MarineMRRVLAAGRGVQAGEVETPAMAAEARRETRVEAEGNEEGVGADREQVQDSEHV
Ga0308021_1000932223300031141MarineVETPAMAAEAGRETRRGAESDEESDGCNGAQDSARVRVRNTY
Ga0308021_1001383513300031141MarineMRELLGAGRGVQAGEVETPAMAAEARIETRLGAEGDEEGDGGDGAQDSERVRFSNTY
Ga0308021_1001636613300031141MarineAGRGVQAGEVEAPAMVAEARRARKSEEEGGGGDGAQDSERVRNT
Ga0308021_1002586923300031141MarineMREVLGAGRGAQAGEVETPAMAAEARRETRLGAEGDEEGDGGDGVRIQDSERVWLQP
Ga0308021_1004372653300031141MarineMREVLGAGRGVQAGEVETPAMTAEAGRETRRGAESDEESDGCDGAQDSARVRIRNTY
Ga0308021_1005015033300031141MarineGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCNEAQDSARVRVRNTY
Ga0308021_1006058813300031141MarineMREALGAGRGVQAGEVETPAMTAEARRETRLGAEGDEEGDGGDGAQDSERVG
Ga0308021_1007427813300031141MarineAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQYSARVRVRNTY
Ga0308021_1007711333300031141MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSERV
Ga0308021_1009175013300031141MarineMREGLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGA
Ga0308021_1011912823300031141MarineMREVLGAGRGVHAGEVETPAMAAEAGRETRRGAESDEESDGCNGAQD
Ga0308021_1014189113300031141MarineEVETPAMAAEAGRETRRGAESDEESDGCNEAQDMRSARVRVRNTY
Ga0308021_1018908023300031141MarineVQAGEVETPAMAAEAGREMRREAESDKESDGCNGAQDSARVRVRNTY
Ga0308021_1019153823300031141MarineMREVLGAGQGVQAGEVETPAMAAEAGRETRRGAESDEESDGGNEAQDSARVRVRNTY
Ga0308021_1022113613300031141MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCNGAQDSARVRVRNTHTLRLSRKA
Ga0308021_1024036813300031141MarineVQAGEVEIPAMAAEARRETRQGAGSDEEGDGGDGAQDSERGYMYATHTKPQGFIPR
Ga0308021_1028769923300031141MarineMREVLGAGRGVQAGEVETPAMVAEARRARKSEEEGGGGDGAQDSERVRNT
Ga0308021_1029392823300031141MarineLGAGRGVQTGEVDTPAMAAEARRETRQGAEGDEEGDGGDGAHDSERV
Ga0308021_1029779623300031141MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDRCDGAQD
Ga0308021_1030763613300031141MarineMREVLRAGRGVRAGEVETPAMAAEARRETRRGAESDEEGDGGDGAQDSERVR
Ga0308021_1033325213300031141MarineVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSERVRVRNTY
Ga0302131_126389013300031594MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAERDEESDGCNEAQDSARVHVRVRNTH
Ga0308009_1012371813300031612MarineGGRGVQAGEVETAMAAEVRKGLGAEGDEEGDGGDGSQDSERVCRRIKRNTY
Ga0308009_1025176923300031612MarineMRVVLGAGRGVQAGEVETPAMAAEARRETRLGAEGDEEGDGCDGVQDDSERVGLRNTY
Ga0308009_1028878313300031612MarineMREVFGAGRSVQAGEVETPAMAAEARREARRGAESDEEGDGGDGAQDSARVRVRNTY
Ga0308009_1029771713300031612MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCNEAQDSARVRVRNTY
Ga0308009_1033283113300031612MarineEVETPVMAAEARRETRRGAESDEESDGCDGAQDSARVRVRSTSHNT
Ga0302126_1010833423300031622MarineGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCERVRVRNTTY
Ga0302126_1032180013300031622MarineMREVLGAGRGVQAGEVEVPAMAAEAGRETRRGAESDEESDGCD
Ga0307985_1016223313300031629MarineVQAGEVETPAMAAEVRRETRRGSEGDEEGDGGDGAQDTER
Ga0307985_1032460323300031629MarineMRELLGAGRGEQAGKVERPAMAAEERRETRQAGAEGDEEGDGGDRAHDSERK
Ga0307985_1032729213300031629MarineMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQDCNTTY
Ga0308012_1015584713300031647MarineRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSERVGLRNAY
Ga0308012_1021606713300031647MarineVYSEEAMREVLGAGRGVQASEVETPAMAAESRRETRQGAKGDEEGDGGDGAQDSERAGLRNTN
Ga0308018_1004402323300031655MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSARVRVRNTY
Ga0308018_1011580723300031655MarineTMKEVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSERVRVRNTY
Ga0308018_1017107713300031655MarineGAGRGVQAGEVETPAMAAEAGRETRRGEESDEESDGCNEAQDSARVRVRNTH
Ga0308018_1026811113300031655MarineMAAEARKETRRGAEGDEEGDEEGDGGDGAQDSERVGLRNTYIQAYIRV
Ga0308018_1026959113300031655MarineVLGAGRGVQAGEVESPAMAAEAGRETRWGAESDEESDGCDGAQDSERVRVRLRNTYAGGG
Ga0308006_1008017223300031683MarineMREVLRAGRGVRLGEVETPAMAAEARRETRRGAESDEEGDGGDGAQDSERVR
Ga0308006_1017152223300031683MarineMRDERGVGAGRGVQAGEAETPAMVAEARRETKWGAESDEDEEGDGGDGAQAQDSERVWV
Ga0308015_1003297013300031694MarineEAMRELLGAGRGVQAGEVETPAMAAEARIETRLGAEGDEEGDGGDGAQDSERVRFSNTY
Ga0308015_1013685413300031694MarineGKCEEAMREVLGAGRGVQAGEVETPPMAAVARRETRLGAEGDEEGEGGDSERV
Ga0308015_1021481923300031694MarineMREVLGAGRGVQAGEVESPAMAAEAGRETRWGAESDEESDGCDGAQDSERVRVR
Ga0308015_1031112213300031694MarineVQAGEVETPAMAAEAGRETRRGAESDEESDGCNGAQDSARVRVRNTYIYIKT
Ga0308015_1045659713300031694MarineGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQDSARVRVRNIY
Ga0308003_115032223300031705MarineMRRVLAAGRGVQAGEVETPAMAAEARRETRLEAEGNEEGVGADREQVQDSESTYKRFT
Ga0307997_1006825923300031706MarineMRELLGAGRGVQAGEVETPAMAAEARIETRLGAEGDEEGDGGDGAQ
Ga0308000_1010939613300031848MarineMREVLGAGRGVQAGEVETPAMVAEARRETKWGAESDEDEEGDGGDGAQDSERVWV
Ga0308000_1021784623300031848MarineMREVLGAGRGVQAGEVETPAMAAEAGRETRRGAESDEESDGCDGAQYSARVRVRNTY
Ga0315329_1062291113300032048SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQAAESDEESDGCDGPQDCERVSLRERSD
Ga0314680_1004256713300032521SeawaterMREVLGAGRGVQAGEVEISAMAAEAGRETRQGAESDEESDGCDGAQDCNTTYTKPKGFKIRPP
Ga0314680_1091404213300032521SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQDCNTTY
Ga0314683_1050296323300032617SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDDESDGCDGAQDCNTTY
Ga0314673_1004189213300032650SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGC
Ga0314669_1043286723300032708SeawaterMREVLGAGRGVQVGEVKIPAMAAEAEKETRQGAESDEESNGCDGAQDCER
Ga0314690_1006169413300032713SeawaterVIWVRGKCEEAMREVLGAGRGVQAGEVEIPAMAAEARRETRQGAESDEDSDGCDGAQDCEHV
Ga0314693_1036201023300032727SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAESDEESDGCDGAQVCEHVRVRNTTYYQ
Ga0314696_1022029023300032728SeawaterMREVLGAGRGGQAGEVEIPAMAAEAGRETRQGAESDEE
Ga0314711_1026895323300032732SeawaterMREVLGAGRGVQAGEVEISAMAAEAGRETRQGAESDEESDGCDGAQDCERVRIS
Ga0314706_1047601913300032734SeawaterMREVLGAGRGVQAGEVEIPAMAAEAGRETRQGAASDEESDGCDGAQECNTTY
Ga0314705_1070109023300032744SeawaterMREVLGAGRGIQAGEVETPAMAAGARRVTRQGAEGDEQGDGGDRAHDSERVCLC
Ga0314713_1002571923300032748SeawaterMREVLGAGRGVQAGEVEISAMAAEAGRETRQGAESDEESDGCDGAQDCNTTY
Ga0314694_1048571323300032751SeawaterMREVLGAGRGVQAGEVEISAMAAEAGRETRQGAESDEESDGCDGAQD


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