Basic Information | |
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Family ID | F105291 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 67 residues |
Representative Sequence | FEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Number of Associated Samples | 73 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 18.00 % |
% of genes near scaffold ends (potentially truncated) | 53.00 % |
% of genes from short scaffolds (< 2000 bps) | 79.00 % |
Associated GOLD sequencing projects | 65 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (84.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (84.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (100.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 11.94% β-sheet: 32.84% Coil/Unstructured: 55.22% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Aqueous Seawater Salt Marsh |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0075502_17182192 | 3300006357 | Aqueous | FEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL* |
Ga0075503_17056072 | 3300006400 | Aqueous | IEMTETCKQMVHSGGAVRMAVMQWGSLSTAVLTNDLTSNISINKTWHANCRKPDVSKILDWLVL* |
Ga0075506_10094412 | 3300006401 | Aqueous | VIEMTETRKQLVHSGGAVGMAVMPWGPFSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL* |
Ga0075511_18063231 | 3300006402 | Aqueous | TETCKQMVHSGGAVRMAVMPWGSPSTAVLTNDLTSNISINKTWHANCRKPDVSKILDWLVL* |
Ga0075514_19359822 | 3300006403 | Aqueous | IEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLPNDLTSNIIINKTWHANCRQMDVSKFLDWLV* |
Ga0075514_19592801 | 3300006403 | Aqueous | VHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL* |
Ga0075461_101509862 | 3300006637 | Aqueous | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDVTSNITINKTWHENCRKSDVSKILDWLVL* |
Ga0075476_102115282 | 3300006867 | Aqueous | MTETRKQLVHSGGAVDMAVMPWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL* |
Ga0129331_12810622 | 3300012524 | Aqueous | IEMTEMCKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCKKPDVSKILDWLVL* |
Ga0129352_101935501 | 3300012528 | Aqueous | IEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHADCRTSAVSKILDWLVK* |
Ga0129352_103082821 | 3300012528 | Aqueous | MTETRKQLVHSSGAVDMAVMPWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL* |
Ga0129352_103686302 | 3300012528 | Aqueous | FEVIEMTETREQLVNSGGAVAVSVMPWGSPSTMLLTNDLMSEITFNKTWHINCRENNVSKILDWLV* |
Ga0129343_14177581 | 3300012967 | Aqueous | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL* |
Ga0129343_14529932 | 3300012967 | Aqueous | ECQTFEVIEMTETCKQMVHSSAAVRMAVMPWGSPSTAVLTNDLTSNISINKTWHANCRKPDVSKILDWLVL* |
Ga0182050_10391452 | 3300016689 | Salt Marsh | FEVIEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHENCKKPDVSKILDWLVL |
Ga0182048_11388602 | 3300016724 | Salt Marsh | VHSGGAVGMAVMPWGSSSTAVLTNDLTSNIIIKTWHANCRKPDVSKFLDWLV |
Ga0182048_13814582 | 3300016724 | Salt Marsh | LLAYGECQTFEVIEMTETRKQLVHSGGAVDMAVTLWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0182045_10985821 | 3300016726 | Salt Marsh | IEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0182051_11772982 | 3300016727 | Salt Marsh | FEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTTVLTNDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0182051_12972691 | 3300016727 | Salt Marsh | FEVIEMTETRKQLVHSGGAVDMAVTLWGSPSTTVLANDLPSNITINKTWHANCRKPDVSKFLDWLV |
Ga0182057_10411862 | 3300016732 | Salt Marsh | VIEMTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKPDVSKILDWLV |
Ga0182042_12876902 | 3300016733 | Salt Marsh | FEVIEMTETCKQMVHSGGAVRMAVMPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0182092_11618761 | 3300016734 | Salt Marsh | IEMAELRKQMVHSGGAAGLTVMPWGSPSITVLTNDLMSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0182049_12576632 | 3300016736 | Salt Marsh | VIEMTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKLDVSKILDWLV |
Ga0182049_12579901 | 3300016736 | Salt Marsh | QTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0182096_14173452 | 3300016740 | Salt Marsh | FEVIEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHANCRNRDVSKILDWLVL |
Ga0182079_14513662 | 3300016741 | Salt Marsh | FEVIEMTETRKQVVYSGGAVGMAVMPWGAASTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0182052_10908761 | 3300016742 | Salt Marsh | QTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0182093_12976501 | 3300016745 | Salt Marsh | MTETRKQMVHSGGAVGMAVMPWGSSSTTVLTNDLTSNVTLNKTWHANCRKPDVSKILDWL |
Ga0182053_15093201 | 3300016749 | Salt Marsh | LLACGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0182072_11978302 | 3300016754 | Salt Marsh | EMTETRKQLVHSGGAVGMTVTLWGSPSTAVLTNDLTSNISINKTWHENCRKSDVSKILDWLVL |
Ga0182070_12344221 | 3300016758 | Salt Marsh | IEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0182070_14148792 | 3300016758 | Salt Marsh | FEVIEMTETCKQMVHSSGAVRMAVMPWGSPSTAVLTNDLTSYISINKTWHANCRKPDVSKILDWLVL |
Ga0182091_12730752 | 3300016766 | Salt Marsh | FEVIEMAELRKQMVHSGGAAGLTVMPWGSPSITVLTNDLMSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0182082_12259892 | 3300016771 | Salt Marsh | FEVIEMTETCKQMVHSGGAVRMAVMPWGSPSTAVLTNDLTSYISINKTWHANCRKPDVSKILDWLVL |
Ga0181552_100356722 | 3300017824 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0181552_100673622 | 3300017824 | Salt Marsh | LLEEWECQTFEVIEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0181552_101388792 | 3300017824 | Salt Marsh | MRERQIFEVIEMTETRKQIVHSGGAAGLTVMPCGLPSMTVLTNDLPSNVTINKTWHANCRELDVSKILDWLVL |
Ga0181552_105247982 | 3300017824 | Salt Marsh | LLDKGECQTFEVIEMTETRKQLVHSGGAVDMAVTLWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0181607_100726892 | 3300017950 | Salt Marsh | LLDYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0181583_101482232 | 3300017952 | Salt Marsh | LLEEWECQTFEVIEMTETRKQLVHRGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0181580_100268052 | 3300017956 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTTVLTNDLTSNITINKTWHANCRKTDVSKILDWLVL |
Ga0181580_101007081 | 3300017956 | Salt Marsh | QMVHSNAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHANCRNPDVSKILDWLVL |
Ga0181581_102073572 | 3300017962 | Salt Marsh | LVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCKKPDVSKILDWLVL |
Ga0181589_100138683 | 3300017964 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTTVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0181587_100331501 | 3300017968 | Salt Marsh | MTETRKQLVHSGGTVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0181587_101905382 | 3300017968 | Salt Marsh | LLDKGECQTFEVIEMTETRKQLVHSGGAVGMAVTLWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0181576_100626473 | 3300017985 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHANCRKTDVSKILDWLVL |
Ga0181600_100807492 | 3300018036 | Salt Marsh | VRERQTFEVIEMAEPRKQMVHSGGAAGLTVMPWGSPSITVLTNDLMSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181600_103114262 | 3300018036 | Salt Marsh | VIEMTETRKQLVHSGGAVGMTVTLWGSPSTAVLTNDLTSNIIIKTWHANCRKPDVSKFLDWLV |
Ga0181600_103916622 | 3300018036 | Salt Marsh | LLAYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0181600_103963922 | 3300018036 | Salt Marsh | LLDARERQTFEVIEMTETRKQMVHSGGAAGLTVMPWGSPSMTVLTNDLPSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181579_101356902 | 3300018039 | Salt Marsh | LLAYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTTVLTNDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0181601_101442122 | 3300018041 | Salt Marsh | LLAYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0181601_103959552 | 3300018041 | Salt Marsh | LLDARERQTFEVIEMSETRKQMVHSGGAAGLTVMPWGSPSMTVLTNDLPSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181561_103259661 | 3300018410 | Salt Marsh | EMTETRKQMVHSGGAAGLTVMPWGSPSITLLTNDLMSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181561_103650022 | 3300018410 | Salt Marsh | LLAYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCKKSDVSKILDWLVL |
Ga0181561_104616212 | 3300018410 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKLDVSKILDWL |
Ga0181561_105704042 | 3300018410 | Salt Marsh | LLDYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0181560_105854312 | 3300018413 | Salt Marsh | FEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0181559_106644052 | 3300018415 | Salt Marsh | LLDYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKLDVSKILDWLV |
Ga0181553_100611232 | 3300018416 | Salt Marsh | LLDARERQTFEVIEMTETRKQMVHSGGAAGLTVMPWASPSMTVLTNDLPSNVTINKTWHANCRELDVSKILDWLVL |
Ga0181553_100846062 | 3300018416 | Salt Marsh | LLDKGECQTFEVIEMTETRKQLVHSGSAVDMAVMPWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0181553_101419781 | 3300018416 | Salt Marsh | LLEEWECQTFEVIEMTETRKQLVHSGGAVRMAVVPWGSPSTVVLTNDLTSNISINKTWHANCKKPDVSKIL |
Ga0181558_101565312 | 3300018417 | Salt Marsh | LLNARERQTFEVIEMTETRKQMVHSGGAAGLTVMPWASPSMTVLTNDLPFNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181567_103886822 | 3300018418 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKFLDWL |
Ga0181563_101457012 | 3300018420 | Salt Marsh | LLEEWECQTFEVIEMTETRKQLVHSGGAVGMTVTLWGSPSTAVLTNDLTSNIIIKTWHANCRKPDVSKILDWLVL |
Ga0181591_109884392 | 3300018424 | Salt Marsh | LLVEGECQTFEVIEMTETCKQMVHSGGAVRMAVMPWGSPSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0181568_101826971 | 3300018428 | Salt Marsh | LLDYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTFNITINKTWHENCKKPDVSKILDWLVL |
Ga0182097_11596992 | 3300019261 | Salt Marsh | ECQIFEVIEMTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKPDVSKILDWLV |
Ga0182073_11579562 | 3300019274 | Salt Marsh | VIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0182068_10395912 | 3300019280 | Salt Marsh | FEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0182068_12687861 | 3300019280 | Salt Marsh | FEVIEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0182077_14168171 | 3300019281 | Salt Marsh | FEVIEMTETCKQMVHSGGAVRMAVMPWGSTSTAVLTNDLTSNISINKTWHANCRNRDVSKILDWLVL |
Ga0182075_16424412 | 3300019282 | Salt Marsh | GECQTFEVIEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0182058_11705921 | 3300019283 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKPDVSKILDWL |
Ga0181595_100361573 | 3300020053 | Salt Marsh | VRERQTFEVIEMAELRKQMVHSGGAAGLTVMPWGSPSITLLTNDLMSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0181595_103917061 | 3300020053 | Salt Marsh | MRERQIFEVIEMTETRKQIVHSGGAAGLTVMPCGLPSMTVLTNDLPFNVTINKTWHANCRKPDVSKILDWL |
Ga0181578_102052662 | 3300020189 | Salt Marsh | EVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0181597_103409371 | 3300020194 | Salt Marsh | LLDARERQTFEVIEMTETRKQMVHSGSAAGLTVMPWGSHSMTVLTNDLPSNVTINKTWHANCRKPD |
Ga0181570_100087191 | 3300020207 | Salt Marsh | MTETCKQMVHSSAAVRMAVMPWGSPSTAVLTNDLTSNISINKTWHANCRKPDVSKILDWLVL |
Ga0181598_10117433 | 3300020810 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0213863_100235111 | 3300021371 | Seawater | MTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKTDVSKILDWLVL |
Ga0213863_101861722 | 3300021371 | Seawater | LLDEGERQTFEVIEMTEMCKQLVHSGGAVGMAVMPWGSSSTTVMTNDLTSNITINKTWHANCKKTDVSKILDWLVL |
Ga0255771_12322712 | 3300022900 | Salt Marsh | MTETRKQLVHSGGAVDMAVTLWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0255756_10262393 | 3300022905 | Salt Marsh | MTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWL |
Ga0255779_10489432 | 3300022922 | Salt Marsh | MTETRKQLVHSGSAVDMAVMPWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0255779_10975422 | 3300022922 | Salt Marsh | VIEMTETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0255753_10571651 | 3300022926 | Salt Marsh | VEGECQTFEVIEMTETCKQMVHSGGAVRMAVMPWGSPSTAVLTNDLTSNISINKTWHANCRKPDVSKILDWLVL |
Ga0255758_101924172 | 3300022928 | Salt Marsh | LLDKGECQTFEVIEMTETRKQLVHSGGAVDMAVMPWGSPSTTVLANDLTSNITINKTWHANCRKPDVSKILDWLVL |
Ga0255752_100388463 | 3300022929 | Salt Marsh | MTETRKQMVHSGGAAGLTVMPWGSPSMTVLTNDLPSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0255764_101632742 | 3300023081 | Salt Marsh | LKGERQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKPDVSKILDWLVL |
Ga0255778_102452951 | 3300023084 | Salt Marsh | ETRKQLVHSGGAVGMAVTPWGSPSTAVLTNDLTSNIIINKTWHANCRKPDVSKFLDWLV |
Ga0255778_103389912 | 3300023084 | Salt Marsh | SECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCRKSDVSKILDWLVL |
Ga0255784_104481841 | 3300023108 | Salt Marsh | MTETRKQLVHSGGAVGMAVMPWRSYSTAVLTHDLTSNITINKTWHANCRKPDVSKILD |
Ga0255751_103157721 | 3300023116 | Salt Marsh | TFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSYISINKTWHANCRKPDVSKILDWLVL |
Ga0255776_102391382 | 3300023173 | Salt Marsh | LLEEWECQTFEVIEMTETRKQLVHSGGAVGMAVTLWGSPSTAVLTNDLTSNIIIKTWHANCRKPDVSKFLDWLV |
Ga0255759_104727982 | 3300023178 | Salt Marsh | LLDYGECQTFEVIEMTETRKQLVHSGGAVGMAVMPWGSSSTAVLTNDLTSNITINKTWHENCMKPDVSKILDWLVL |
Ga0255763_10705252 | 3300023273 | Salt Marsh | LLNARERQTFEVIEMTETRKQMVHSGGAAGLTVMPWGSPSMTVLTNDLPSNVTINKTWHANCRKPDVSKILDWLVL |
Ga0232122_10118213 | 3300023709 | Salt Marsh | QTFEVIEMTETRKQMVHSGGAAGLTVVPWGSPSMTVLTNDLPSNVTINKTWHANCRKTDVSKILDWLVL |
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