NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105286

Metagenome / Metatranscriptome Family F105286

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105286
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence MKSTASKPKLPRGRRGKKANSAEINQATAAEFEREGMGVAPKE
Number of Associated Samples 83
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 1.00 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere
(16.000 % of family members)
Environment Ontology (ENVO) Unclassified
(55.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(56.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1MBSR1b_0933.00002610
2C688J18823_105303422
3Ga0062593_1016095212
4Ga0063455_1000029951
5Ga0063356_1015475582
6Ga0063356_1030353372
7Ga0062595_1001527583
8Ga0062594_1007223293
9Ga0062594_1013337042
10Ga0066671_108639482
11Ga0066676_108809251
12Ga0070658_100135275
13Ga0070658_103265003
14Ga0070658_103744272
15Ga0070658_104422502
16Ga0070670_1000199443
17Ga0070666_103741642
18Ga0070680_1002994302
19Ga0070661_1017422041
20Ga0070668_1006637361
21Ga0070674_1003419375
22Ga0070673_1000282683
23Ga0070659_1000207164
24Ga0070659_1012842111
25Ga0066687_105259962
26Ga0070662_1002332093
27Ga0070739_100719943
28Ga0070686_1019222282
29Ga0068864_1000582742
30Ga0068858_1013198061
31Ga0081539_100503831
32Ga0068871_1002903883
33Ga0074056_100274553
34Ga0074054_119656403
35Ga0105247_116024871
36Ga0126313_110084252
37Ga0126309_103135022
38Ga0126309_106980672
39Ga0126308_100211612
40Ga0126311_113034072
41Ga0126320_12736712
42Ga0126318_110759581
43Ga0134126_105935882
44Ga0151489_14024652
45Ga0150985_1038945702
46Ga0150984_1020022933
47Ga0150984_1114405142
48Ga0164300_101677113
49Ga0164299_106569571
50Ga0164306_105501682
51Ga0164305_101536161
52Ga0157370_112979372
53Ga0157378_105886301
54Ga0157378_114017212
55Ga0163163_124390002
56Ga0182000_102380302
57Ga0182001_107063582
58Ga0132257_1017810871
59Ga0134112_104992732
60Ga0190273_111148382
61Ga0222622_100854031
62Ga0247774_10913192
63Ga0207656_100268682
64Ga0207642_106784811
65Ga0207680_104928803
66Ga0207680_110296962
67Ga0207647_100094745
68Ga0207645_109361472
69Ga0207705_100348123
70Ga0207705_101254113
71Ga0207705_101615123
72Ga0207705_105730662
73Ga0207705_105818102
74Ga0207657_102364804
75Ga0207681_108981292
76Ga0207650_100113755
77Ga0207664_112149341
78Ga0207690_100339433
79Ga0207706_105330581
80Ga0207651_100732373
81Ga0207668_106064902
82Ga0207640_109534742
83Ga0207702_110652531
84Ga0207676_100443882
85Ga0207674_106907142
86Ga0209474_106341012
87Ga0268266_105648882
88Ga0255312_11288662
89Ga0307405_100362893
90Ga0307406_103153402
91Ga0307407_104008831
92Ga0307412_105464733
93Ga0308175_1000208075
94Ga0308175_1000541317
95Ga0308175_1003167933
96Ga0308175_1011351512
97Ga0308176_103259813
98Ga0307416_1009528271
99Ga0326721_110475722
100Ga0307415_1000270573
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.68%    β-sheet: 0.00%    Coil/Unstructured: 87.32%
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Variant

510152025303540MKSTASKPKLPRGRRGKKANSAEINQATAAEFEREGMGVAPKESequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Groundwater Sediment
Soil
Soil
Terrestrial Soil
Serpentine Soil
Grasslands Soil
Surface Soil
Soil
Soil
Soil
Soil
Corn Rhizosphere
Switchgrass Rhizosphere
Agricultural Soil
Sandy Soil
Plant Litter
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
6.0%5.0%5.0%4.0%4.0%5.0%5.0%3.0%6.0%11.0%16.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0933.000026102162886012Miscanthus RhizosphereMKKPAAKPKLPRGRGGKRTDPDERNQATAKDFEREGMGVAPKE
C688J18823_1053034223300001686SoilPPRRVFARMKTSKTKPKVPRGRPGKAATKTGATHATSKEFEREGMGVAPKE*
Ga0062593_10160952123300004114SoilMKKPAAKPKLPRGRGGKRTDPDERNQATAKDFEREGMGVAPKE*
Ga0063455_10000299513300004153SoilMKTSKTKPKVPRGRPGKAATKTGATHATSKEFEREGMGVAPKE*
Ga0063356_10154755823300004463Arabidopsis Thaliana RhizosphereMKKPKTKPKVPRDRRASPAQPDELNQATAKDFEREGLGVAPKE*
Ga0063356_10303533723300004463Arabidopsis Thaliana RhizosphereMKKPAAKPKLPRGRAGKQAKPDELNQATAKDFEREGMGVAPKE*
Ga0062595_10015275833300004479SoilMKSEKSKPKIPRGRPGKTANSGKTNRATSSEFEREGMGVAPKE*
Ga0062594_10072232933300005093SoilMRSSAAKPKIPRGKRGAKPASDEANQATAKDFEREGMGVAPKE*
Ga0062594_10133370423300005093SoilMKNIDPKPKKPAAQRGRKADPDELNQATAAEFEREGMGVAPKE*
Ga0066671_1086394823300005184SoilMKSTASKPKLPRGRRGKKANSAEINQATAAEFEREGMGVAPKE*
Ga0066676_1088092513300005186SoilVRARRVFRSMKSTASKPKLPRGRRGKKANSAEINQATAAEFEREGMGVAPKE*
Ga0070658_1001352753300005327Corn RhizosphereMKSDRSKPKVPRGRGGKAAPKELNQATSKEFEREGMGVAPKE*
Ga0070658_1032650033300005327Corn RhizosphereMAKTSHKSKPKLPRGRRGKPVSDDQELNQATAEDFEEQGMGVAPKE*
Ga0070658_1037442723300005327Corn RhizosphereMKATTDKPKVPRGKRGQKADSGIANKATAKEFEREGMGVAPKE*
Ga0070658_1044225023300005327Corn RhizosphereMTTSASKPKIPRGKRGAKSASGKINQATAKEFEREGMGVAPKE*
Ga0070670_10001994433300005331Switchgrass RhizosphereMKNIDPKPKKPPARRGRKADPDELNQATAAEFEREGMGVAPKE*
Ga0070666_1037416423300005335Switchgrass RhizosphereMKSTPSKPKIPRGRRGKKVDSDGSNKATAAEFEREGMGVAPKE*
Ga0070680_10029943023300005336Corn RhizosphereMKSDRTNPKLPRGRGGKKIDAAETNQATSAEFEREGLGIAPKE*
Ga0070661_10174220413300005344Corn RhizosphereMKAQKTKPKIPRGRLGKKAAPDQSYQATSTEFEREGMGVAPKE
Ga0070668_10066373613300005347Switchgrass RhizosphereMKNIEPKPKKPAAQRGRKADPDELNQATAAEFEREGMGVAPKE*
Ga0070674_10034193753300005356Miscanthus RhizosphereRVFGSMKNIDPKPKKPAAQRGRKADPDELNQATAAEFEREGMGVAPKE*
Ga0070673_10002826833300005364Switchgrass RhizosphereMKSEKSKPKIPRGRPGKTASSGKTNRATSSEFEREGMGVAPKE*
Ga0070659_10002071643300005366Corn RhizosphereMKNIDPKPKKPAARRGRKADPDELNQATAAEFEREGMGVAPKE*
Ga0070659_10128421113300005366Corn RhizosphereELRPAAAGFHLMTTNKSKPKVPRGRRGAGPADGERVRATAKEFEREDMGIAPKE*
Ga0066687_1052599623300005454SoilMKTKAKSRAKAKPPQGHPVTKPKELNQATADEFEREGMGIAPKE*
Ga0070662_10023320933300005457Corn RhizosphereMKAQKTKPKIPRGRLGKKAAPDQSYQATSTEFEREGMGVAPKE*
Ga0070739_1007199433300005532Surface SoilMKSPRAKPQLPRGRKGAKPASDERNEATAEEFEREGLGVAPKE*
Ga0070686_10192222823300005544Switchgrass RhizosphereMRSSAAKPKIPRGKRGAKPASDEANQATAKDFEREGMGVA
Ga0068864_10005827423300005618Switchgrass RhizosphereMKNIDPKPKKPPARRGKKADPDELNQATAAEFEREGMGVAPKE*
Ga0068858_10131980613300005842Switchgrass RhizosphereMRSSAAKPKIPRGKRGAKPASDEANQATAKDFEREGMGV
Ga0081539_1005038313300005985Tabebuia Heterophylla RhizosphereLGQVKRPQAKPKLPRGRGGKKKMDSGEMNQATAADFEREGMGIAPKE*
Ga0068871_10029038833300006358Miscanthus RhizosphereRMKNNEPKTKKPPVQRDRKADPEELNQATSAEFEREGMGVAPKE*
Ga0074056_1002745533300006574SoilMKSTPTKPKLPRGRRGQKVDSGKANQATSEEFEREGMGVAPKE*
Ga0074054_1196564033300006579SoilMKSTPTKPKLPRGRRGQKVDSGKANQATSEEFEREGMGV
Ga0105247_1160248713300009101Switchgrass RhizosphereMKSEKSKPKIPRGRPGKTANSGKTNRATSSEFEREGM
Ga0126313_1100842523300009840Serpentine SoilMKPTPSKPKIPRGKRGKKPASAEINQATADDFEQEGMGVAPKE*
Ga0126309_1031350223300010039Serpentine SoilMKPSTSQPKVPRGRRGKKHDSEQLNQATAAEFEREGMGVAPKE*
Ga0126309_1069806723300010039Serpentine SoilMKPTSPKPKVPRGRRGKRSSSHEANKATTAEFEQEGMGVAPKE*
Ga0126308_1002116123300010040Serpentine SoilMKILKLLQNKAKPPRGRRGKPAKEDELNQATADEFEREGMGIAPKE*
Ga0126311_1130340723300010045Serpentine SoilMKATPSKPKIPRGKRGKKPASAEINQATADDFEQEGMGVAPKE*
Ga0126320_127367123300010146SoilMKAEQTKPKVPRGRGGKKTKPRETNQATIAEFERKGLGVAPKE*
Ga0126318_1107595813300010152SoilLEDGMKSDRSKPKMPRGRPGKKADSDRTNPATSAEFEREGMGIAPKE*
Ga0134126_1059358823300010396Terrestrial SoilMKPSTRPKTRPKLPRGRRGKTPEESERNQATSVEFEREGMGIAPKE*
Ga0151489_140246523300011106SoilMIKMKKLKLPRGLRRKKIDSDEVNQATADEFEREGMGIAPKE*
Ga0150985_10389457023300012212Avena Fatua RhizospherePKLPRGRRGQKADSGNANQPTAKEFEREGMGVAPKE*
Ga0150984_10200229333300012469Avena Fatua RhizospherePKVPRGRPGKAATKTGATHATSKEFEREGMGVAPKE*
Ga0150984_11144051423300012469Avena Fatua RhizosphereMKSDRSKPKVPRGRAGKAAPKELNQATSKEFEREGMGVAPKE*
Ga0164300_1016771133300012951SoilMAKTSHKSKPKLPRGRRGKPSSDNEELNQATAEDFEEQGMGVAPKE*
Ga0164299_1065695713300012958SoilMAKTSHKSKPKLPRGRRGKPASDDEELNQATAEDFEEQGMGVAPKE*
Ga0164306_1055016823300012988SoilMAKTSHKSKPKLPRGRRGKPTSDNEELNQATAEDFEEQGMGVAPKE*
Ga0164305_1015361613300012989SoilMAKTSSKSKPKLPRGRRGKPVSDDQELNQATAEDFEEQGMGVAPKE*
Ga0157370_1129793723300013104Corn RhizosphereSKPKLPRGRRGKPVSDDQELNQATAEDFEEQGMGVAPKE*
Ga0157378_1058863013300013297Miscanthus RhizosphereMKSTTTKPKLPRGRRGQKVDSGKTNQATAKEFEREGMGVAPKE*
Ga0157378_1140172123300013297Miscanthus RhizosphereMKSTVSKPKIPRGRRGKKADAAPNNKATTAEFEREGLGVAPKE*
Ga0163163_1243900023300014325Switchgrass RhizosphereMKNIDPKPKKPAARRGKKADPDELNQATAAEFEREGMGVAPKE*
Ga0182000_1023803023300014487SoilMKKPAAKPKLPRGRGGKRAGPDQLNQATAKEFEREGMGVAPKE*
Ga0182001_1070635823300014488SoilMTTSRTPERKAKVPRGRRAKKGRDDELNQATTQEFDREGMGVAAKE*
Ga0132257_10178108713300015373Arabidopsis RhizosphereMKTNTPKTKKPPVPRDRRADPDELNQATSTEFEREGMGVAPKE*
Ga0134112_1049927323300017656Grasslands SoilMKSTASKPKLPRGRRGKKANSAEINQATAAEFEREGMGVAPKE
Ga0190273_1111483823300018920SoilMTKNKQSQPKPKQPRGRRTGHPTDNELNQATADEFEREGMGVAPKE
Ga0222622_1008540313300022756Groundwater SedimentKLPRGRGGKRTDPDERNQATAKDFEREGMGVAPKE
Ga0247774_109131923300022903Plant LitterPKLPRGRGGKRTDPDERNQATAKDFEREGMGVAPKE
Ga0207656_1002686823300025321Corn RhizosphereMKSEKSKPKIPRGRPGKTANSGKTNRATSSEFEREGMGVAPKE
Ga0207642_1067848113300025899Miscanthus RhizosphereMKNIDPKPKKPAAQRGRKADPDELNQATAAEFEREGMGVAPKE
Ga0207680_1049288033300025903Switchgrass RhizosphereMRSSAAKPKIPRGKRGAKPASDEANQATAKDFEREGMGVAPKE
Ga0207680_1102969623300025903Switchgrass RhizosphereMKSTPSKPKIPRGRRGKKVDSDGSNKATAAEFEREGMGVAPKE
Ga0207647_1000947453300025904Corn RhizosphereMKSDRTKPKLPRGRGGKKTDSDAANKATTAEFEREGLGVAPKE
Ga0207645_1093614723300025907Miscanthus RhizosphereMKSTTTKPKLPRGRRGQKVDSGKTNQATAKEFEREGMGVAPKE
Ga0207705_1003481233300025909Corn RhizosphereMKSTPTKPKLPRGRRGQKVDSGKANQATSEEFEREGMGVAPKE
Ga0207705_1012541133300025909Corn RhizosphereMKSDRSKPKVPRGRGGKAAPKELNQATSKEFEREGMGVAPKE
Ga0207705_1016151233300025909Corn RhizosphereMKSDRTNPKLPRGRGGKKIDAAETNQATSAEFEREGLGIAPKE
Ga0207705_1057306623300025909Corn RhizosphereMKATTDKPKVPRGKRGQKADSGIANKATAKEFEREGMGVAPKE
Ga0207705_1058181023300025909Corn RhizosphereMAKTSHKSKPKLPRGRRGKPVSDDQELNQATAEDFEEQGMGVAPKE
Ga0207657_1023648043300025919Corn RhizosphereSSRMTTSASKPKIPRGKRGAKSASGKINQATAKEFEREGMGVAPKE
Ga0207681_1089812923300025923Switchgrass RhizosphereMRSSAAKPKIPHGKRGAKPASDEANQATAKDFEREGMGVAPKE
Ga0207650_1001137553300025925Switchgrass RhizosphereMKNIDPKPKKPPARRGRKADPDELNQATAAEFEREGMGVAPKE
Ga0207664_1121493413300025929Agricultural SoilMKSQTTSKRSKPKLPRGRRGGVAAEKMNQATSKEFEREGMGIAPK
Ga0207690_1003394333300025932Corn RhizosphereMKNIDPKPKKPAARRGRKADPDELNQATAAEFEREGMGVAPKE
Ga0207706_1053305813300025933Corn RhizosphereMKAQKTKPKIPRGRLGKKAAPDQSYQATSTEFEREGM
Ga0207651_1007323733300025960Switchgrass RhizosphereMKSEKSKPKIPRGRPGKTASSGKTNRATSSEFEREGMGVAPKE
Ga0207668_1060649023300025972Switchgrass RhizosphereMKNIEPKPKKPAAQRGRKADPDELNQATAAEFEREGMGVAPKE
Ga0207640_1095347423300025981Corn RhizosphereMKSSDPKAKPPPARRPKKGDPDELNQATTKEFEREGLGVAPKE
Ga0207702_1106525313300026078Corn RhizosphereKPKIPRGRPGKTASSGKTNRATSSEFEREGMGVAPKE
Ga0207676_1004438823300026095Switchgrass RhizosphereMKNIDPKPKKPPARRGKKADPDELNQATAAEFEREGMGVAPKE
Ga0207674_1069071423300026116Corn RhizosphereMKNIDPKPKKPAARRGKKADPDELNQATAAEFEREGMGVAPKE
Ga0209474_1063410123300026550SoilMKTKAKSRAKAKPPQGPPVTKPKELNQATADEFEREGMGIAPKE
Ga0268266_1056488823300028379Switchgrass RhizosphereMTTSASKPKIPRGKRGAKSASGKINQATAKEFEREGMGVAPKE
(restricted) Ga0255312_112886623300031248Sandy SoilMKRPQPKRPKPKEPRGRPGLKAGKDVNRATAAEFEREGMGVAPKE
Ga0307405_1003628933300031731RhizosphereMKAAPFKPKVPRGRRGKKPASAEVNQATTEEFEREGLGVAPKE
Ga0307406_1031534023300031901RhizosphereMKILKLFQKAKPPRGRRGKPAKEDELNQATADEFEREGMGIAPKE
Ga0307407_1040088313300031903RhizosphereMKAAPSKPKVPRGRRGKKPASAEVNQATTEEFEREGLGVAPKE
Ga0307412_1054647333300031911RhizosphereMTGTSTRSTKPKLPRGRRGAKPKDENKNQATVEEFDREGLGVAPKE
Ga0308175_10002080753300031938SoilMAKTSSKSKPKLPRGRRGKPVSDDEELNQATAEDFEEQGMGVAPKE
Ga0308175_10005413173300031938SoilMKSTASKPKVPRGRRGKKVNSAEINQATAAEFEREGLGVAPKE
Ga0308175_10031679333300031938SoilMAKTSSKSKPKLPRGRGGKPVSDDEELNQATAEDFEEEGMGVAPKE
Ga0308175_10113515123300031938SoilMAKTSSKSKPKLPRGRRGKPTSDNEELNQATAEDFEEQGMGVAPKE
Ga0308176_1032598133300031996SoilLAERVFNWMAKTSSKSKPKLPRGRGGKPVSDDEELNQATAEDFEEEGMGVAPKE
Ga0307416_10095282713300032002RhizosphereTRSTKPKLPRGRRGAKPQDENKNQATVDEFDREGLGVAPKE
Ga0326721_1104757223300032080SoilMKSTTDKPKVPRGKRGQKAGSATGNKATAKEFEREGMGVAPKE
Ga0307415_10002705733300032126RhizosphereMKAAPSKPKVPRGRRGKKPAPAEVNQATTEEFERDGLGVAPKE


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